Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_C01
         (912 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC053992-1|AAH53992.1| 1312|Homo sapiens SR-related CTD-associat...    31   5.8  
AK024444-1|BAB15734.1| 1343|Homo sapiens FLJ00034 protein protein.     31   5.8  
AF254411-1|AAF87552.1| 1312|Homo sapiens ser/arg-rich pre-mRNA s...    31   5.8  

>BC053992-1|AAH53992.1| 1312|Homo sapiens SR-related CTD-associated
           factor 1 protein.
          Length = 1312

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +2

Query: 707 SPXKAPPVRSPXSXPXPXPDTLSNFPPFGXAWGPPHXXXXXVSPF 841
           SP   PP  +P + P P  D    F P   A+ PP        PF
Sbjct: 207 SPPPPPPPPAPPAPPAPRFDIYDPFHPTDEAYSPPPAPEQKYDPF 251


>AK024444-1|BAB15734.1| 1343|Homo sapiens FLJ00034 protein protein.
          Length = 1343

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +2

Query: 707 SPXKAPPVRSPXSXPXPXPDTLSNFPPFGXAWGPPHXXXXXVSPF 841
           SP   PP  +P + P P  D    F P   A+ PP        PF
Sbjct: 238 SPPPPPPPPAPPAPPAPRFDIYDPFHPTDEAYSPPPAPEQKYDPF 282


>AF254411-1|AAF87552.1| 1312|Homo sapiens ser/arg-rich pre-mRNA
           splicing factor SR-A1 protein.
          Length = 1312

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +2

Query: 707 SPXKAPPVRSPXSXPXPXPDTLSNFPPFGXAWGPPHXXXXXVSPF 841
           SP   PP  +P + P P  D    F P   A+ PP        PF
Sbjct: 207 SPPPPPPPPAPPAPPAPRFDIYDPFHPTDEAYSPPPAPEQKYDPF 251


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,891,955
Number of Sequences: 237096
Number of extensions: 1329284
Number of successful extensions: 4042
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3971
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)