Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_B23
(914 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 110 2e-25
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.057
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 32 0.099
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 32 0.13
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 31 0.30
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 28 2.1
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 2.1
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.8
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 27 4.9
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 6.5
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 26 6.5
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 26 8.6
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 110 bits (265), Expect = 2e-25
Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 6/144 (4%)
Frame = +2
Query: 347 VLNQSGEEQVECPLCMEPLEVDDLHFYPCTCGYQICRFCWNRIREGENGLCPACRKAYPE 526
+ + E+ + CPLCME +++ D +F PC CGY++CRFCW+ I+E NG CPACR+ Y E
Sbjct: 7 IYSSEDEDDMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLYTE 66
Query: 527 NPADFIPLSQEQVAA---IKTEKKAREQKRRNKTLESRRALAXXXXXXXXXXXXXGLPVR 697
+ P++ E+ K E+K RE++R+ L +R+ LA GL +
Sbjct: 67 ENVQWRPVTAEEWKMDLHRKNERKKREKERKEVELSNRKHLANIRVVQKNLAYVNGLSPK 126
Query: 698 LADPE---I*NGKSTLGKYGKFTK 760
+A+ E + G G+YGK K
Sbjct: 127 VANEENINVLKGPEYFGQYGKIIK 150
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 33.1 bits (72), Expect = 0.057
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +2
Query: 356 QSGEEQVECPLCMEPLEVDDLHFYPCTCGYQICRFC-WNRIREGENGLCPACR-KAYPE- 526
Q ++ +ECP+C E L+ + CG+ C C N ++E ++ CP CR K Y +
Sbjct: 77 QKIKKTLECPICTEALQ----RPFTTHCGHTYCYECLLNWLKESKS--CPTCRQKLYTQP 130
Query: 527 NPADFIPLSQEQVAA 571
+PA + VAA
Sbjct: 131 SPAYLVYEIMNVVAA 145
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 32.3 bits (70), Expect = 0.099
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 323 LALGSRMSVLNQSGEEQVECPLCMEPLEVDDLHFYPCTCGYQICRFCW----NRIREGEN 490
L L S+ ++ +E + C +C E + D + C + CR C N +GEN
Sbjct: 692 LVLASKRKTVDIENQENIVCKICDEVAQ-DAIE---SRCHHTFCRLCVTEYINAAGDGEN 747
Query: 491 GLCPAC 508
CP+C
Sbjct: 748 VNCPSC 753
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +2
Query: 350 LNQSGE-EQVECPLCMEPLEVD 412
+N +G+ E V CP C PL +D
Sbjct: 739 INAAGDGENVNCPSCFIPLSID 760
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 365 EEQVECPLCMEPLEV-DDLHFYPCT-CGYQICRFCWNRIREGENGLCPACRKAYPEN 529
+E+ EC +CME ++ DD+ PC ++ C W R+ NG C CR N
Sbjct: 391 DEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRV----NGTCAICRAPVDPN 443
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 30.7 bits (66), Expect = 0.30
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Frame = +2
Query: 383 PLCMEPLEVDDLHFYPCTCGYQICRF-CWNRIR-------EGENGL-CPACRKAYPENPA 535
P+C + L + H + CGY C F +I+ + ENG C CR+ Y P
Sbjct: 143 PMCDKLLNFINGHIHCRKCGYIFCNFHSMYQIKLSIHATYDSENGFWCRVCRECYEGRPG 202
Query: 536 --DFIPLSQEQVAAIKTEKKAREQKRR 610
D L + + +T +K KRR
Sbjct: 203 YNDSNGLIRSRFQTFETFRKPLADKRR 229
Score = 25.8 bits (54), Expect = 8.6
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +2
Query: 344 SVLNQSGEEQVE-CPLCMEPLEVDDLHFYPCTCGYQICRFCWNRIREGENG----LCPAC 508
S+++ + V+ CP C + + CG ICRFC I ++ +C +C
Sbjct: 268 SIVHWQDDSVVQICPECNNSFTLTRRRRHCRLCGRVICRFCVLEISLPQHPQPLLICMSC 327
Query: 509 RKAYPEN 529
+ Y N
Sbjct: 328 NQNYFRN 334
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/78 (21%), Positives = 33/78 (42%)
Frame = +1
Query: 523 RKPGRLHSSQSRAGGSDKDGEESPRAETSQQDARVAACARERSRRTEQPRVRRGPARQTR 702
RKPG++ + A S+ R + Q+ + + + + ++ PA +
Sbjct: 501 RKPGQVAPQSTNAEPSNNQSNPPLRDQEPQRGDK--GDIKSAINNSTEDLSKKHPALHSS 558
Query: 703 RPGDLKRQEYFGKVWQIH 756
RP D + + FG +Q H
Sbjct: 559 RPSDSRSRSKFGNDYQSH 576
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 434 TCGYQICRFCWNRIREGENGLCPACRKAYPENPADFIPLSQE 559
TCG+ C FC + + CP C+ +N A +I S++
Sbjct: 1106 TCGHLYCSFCLEAWLK-HSSSCPMCKTKLNKNNAYYIGESRD 1146
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 526 KPGRLHSSQSRAGGSDKDGEESPRAETSQQDARVAACARERSRRTEQPRVR 678
+P + H+S+S + S + ++ RA + R A ERSR T++ + R
Sbjct: 14 RPEKRHASRSSSPRSFRPSNQNARANYNLPRVRDAMKEEERSRETKEMQER 64
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 434 TCGYQICRFCWNRIREGENGLCPACRKAYPEN 529
+C + C FC E+ +CPACR E+
Sbjct: 43 SCSHTFCSFCIRDYLR-EHPMCPACRAPEQES 73
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 546 GMKSAGFSGYAFRQAGQRPFSPSRIRFQQNRH 451
G ++ F G +F G R SP++ F N+H
Sbjct: 507 GRPTSPFMGSSFSNMGSRSTSPTKEGFASNQH 538
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 480 KARTAFAQLVGRHTQKTRQTSFLSVKSRWQ 569
K R+ AQL R TQ++++ SFL K+ Q
Sbjct: 387 KLRSTNAQLTDRITQESKKASFLEQKASEQ 416
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 485 RLLEYDSSKTDIFGIHMYTGRSGGRPLPRVP 393
+LL DSS D+ H+ T G P+P+VP
Sbjct: 788 QLLAEDSSTDDVSLPHLDTIDLDGSPVPKVP 818
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,306,165
Number of Sequences: 5004
Number of extensions: 63460
Number of successful extensions: 222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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