Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B23
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 488 SRLLEYDSSKTDIFGIHMYTGRSGGRPLPR 399
           S +++ DS    ++G H+Y GR+ G PL +
Sbjct: 626 SNVVQIDSP---VWGRHIYDGRAMGFPLDK 652


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 488 SRLLEYDSSKTDIFGIHMYTGRSGGRPLPR 399
           S +++ DS    ++G H+Y GR+ G PL +
Sbjct: 626 SNVVQIDSP---VWGRHIYDGRAMGFPLDK 652


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = -1

Query: 725 CRFKSP-GLRV*RAGPRRTRGCSVRRERSRAHAATLASCCDVSA 597
           CR   P G+ +  A   R+     R E   AH   L  CCD  A
Sbjct: 714 CRTSGPRGVAIVSASTARSEQFLCRYE---AHCFALCHCCDFDA 754


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 149 FKIKCKAEINITVFEDIFCELLY 81
           FK  CK +I    F+D  CE+ +
Sbjct: 144 FKSTCKIDITWFPFDDQRCEMKF 166


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 149 FKIKCKAEINITVFEDIFCELLY 81
           FK  CK +I    F+D  C++ +
Sbjct: 107 FKSTCKIDITWFPFDDQHCDMKF 129


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 149 FKIKCKAEINITVFEDIFCELLY 81
           FK  CK +I    F+D  C++ +
Sbjct: 107 FKSTCKIDITWFPFDDQHCDMKF 129


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 149 FKIKCKAEINITVFEDIFCELLY 81
           FK  CK +I    F+D  C++ +
Sbjct: 175 FKSTCKIDITWFPFDDQHCDMKF 197


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 149 FKIKCKAEINITVFEDIFCELLY 81
           FK  CK +I    F+D  C++ +
Sbjct: 175 FKSTCKIDITWFPFDDQHCDMKF 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,655
Number of Sequences: 438
Number of extensions: 4726
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)