Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_B20
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0040 + 11816056-11819069,11819837-11820428 33 0.31
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993... 33 0.31
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 32 0.71
07_01_0588 + 4370771-4370983,4371069-4371167,4371268-4371399,437... 31 1.2
03_04_0170 - 17982970-17983410,17983535-17983672,17983815-17983826 31 1.2
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 29 3.8
11_06_0142 - 20564572-20565951 29 5.0
11_01_0133 + 1121392-1122731,1123417-1123858 29 5.0
07_03_0620 + 20013974-20014253,20014393-20014756,20014944-20015103 29 6.7
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 28 8.8
05_07_0219 - 28474661-28475146,28475979-28476644 28 8.8
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 28 8.8
04_04_0437 + 25193263-25194627 28 8.8
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 28 8.8
02_05_0547 - 29894421-29894782,29894856-29895045 28 8.8
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443... 28 8.8
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 33.1 bits (72), Expect = 0.31
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 517 PLPHRVPVQGD-GGQGLRHPVQPRGRAQGHVLPPHRHV--EGDPAAAHRRPLP 666
P P PV GD G +G+ V +G A+G + P R V G P AA P P
Sbjct: 49 PPPPTAPVAGDDGSKGVEGVVANQGGAEGVAVSPDRSVPLSGGPTAASSLPPP 101
>02_01_0015 -
98311-98412,98635-98707,98830-98921,99139-99230,
99363-99432,99683-99781,100008-100093,100541-100655,
100853-100918,101064-101143,101226-101301,101915-102151,
102559-102590,102993-103047,103384-103498,104497-104579,
105182-105232,105740-105802,105945-106010,106144-106279,
106503-106591,106844-106964,107138-107340,107434-107820
Length = 862
Score = 33.1 bits (72), Expect = 0.31
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 248 STLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFK 388
S LLD + E D +++PD+ + VF+++ +P+++D G K
Sbjct: 103 SKLLDPKRGRTEVFDGFSSVFSPDSSQHDVFSQVMNPLVDDLLLGGK 149
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 31.9 bits (69), Expect = 0.71
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = -1
Query: 639 WVSFDMP----VRG*NVPLSSPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRV 472
W SFD P V G ++ + + P + +Y ++ G+ GY S PQ
Sbjct: 170 WQSFDHPTDALVPGQSLLQGMILKANTSPTNWTESKIYITILQDGVYGYVESTPPQLYYN 229
Query: 471 ETTNSPAGSRLPSVSTSPQFLGGCLSVFLK 382
++ R+P+ T F GC S+F++
Sbjct: 230 YVVSTNKSKRVPTTVT---FTNGCFSIFVQ 256
>07_01_0588 +
4370771-4370983,4371069-4371167,4371268-4371399,
4372027-4372092,4372458-4372523,4372633-4372707,
4373423-4373653
Length = 293
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Frame = +1
Query: 547 DGGQGLRHPVQPRGR------AQGHVLPPHRHVEGDPAAAHRRPLPVQGGRXLPAGRQ 702
DGG+ R PVQ G A V PPH P H +P P +G P +Q
Sbjct: 67 DGGRTDRDPVQLAGLFAPVFGAAAGVQPPHLRAPPPPQVFHAQPKPGEGAMAAPQPQQ 124
>03_04_0170 - 17982970-17983410,17983535-17983672,17983815-17983826
Length = 196
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 183 AEEVPYQGKYSTA*RTRRPHSDPPSLTVSNRVSRTWTPAS-VSTRRTPSRTPCSPSCL 353
AE QGK RT S PP TVS + WT S+ T S P SPS L
Sbjct: 38 AEAWHAQGKSVILVRTGIGLSVPPGFTVSTEACQQWTHVDHTSSSLTSSLYPLSPSSL 95
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 517 PLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPHRHVEGDPAAAHRRPLPVQ 672
P P P G+RHPV R + HV PP P+++ R+ P Q
Sbjct: 48 PAPAPAPAPETHRPGIRHPVPRHHRKRPHVAPP----LPPPSSSERQVAPYQ 95
>11_06_0142 - 20564572-20565951
Length = 459
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 252 PSLTVSNRVSRTWTPASVSTRRTPSRTPCSPSCL 353
P L S V R+W A + RR R+P P CL
Sbjct: 31 PDLVHSGAVCRSWHSAFATFRRLGLRSPPHPPCL 64
>11_01_0133 + 1121392-1122731,1123417-1123858
Length = 593
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 574 VQPRGRAQGHVLPPHRHVEGDPAAAHRRPLPVQGGRXLPAGRQRLPXLXH 723
V+ R + + PP RHV GD + P LPA +LP H
Sbjct: 2 VRKRPASDMDLPPPRRHVTGDLSDVTAAAAPSSASAQLPALPTQLPAFHH 51
>07_03_0620 + 20013974-20014253,20014393-20014756,20014944-20015103
Length = 267
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 237 PHSDPPSLTVSNRVSRTWTPASVST-RRTPSRTPCS 341
P DP S VS R+ R PA+ RR S TPCS
Sbjct: 145 PTDDPISCLVSLRLRRRRRPAAADRWRRRSSITPCS 180
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 490 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQP 582
P+ RG Q PH++ + D G G+++P P
Sbjct: 322 PMQRGAGAQSHPHQLRRKADQGMGMQNPGYP 352
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 237 PHSDPPSLTVSNRVSRTWTPASVSTRRTPSRTPCSPSCL 353
PH PPS S+ + T T + T TP+ P S + L
Sbjct: 86 PHPPPPSPATSSSRTATATATATPTSPTPTPPPTSATLL 124
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 237 PHSDPPSLTVSNRVSRTWTPASVSTRRTPSRTPC 338
P PP + R SRT TPA+ S+ P+ PC
Sbjct: 340 PAPPPPPPPAAKRTSRTSTPATTSS-SAPASGPC 372
>04_04_0437 + 25193263-25194627
Length = 454
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 227 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELF 352
N TS GS D I+ G N+D YAP+ S+ A F
Sbjct: 365 NYFTSLGSCCWDLIKEGKLNVDRNCIPYAPNQRSHDECAAFF 406
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 495 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 388
+RP+ +RV T +R+P + +++ G LS F
Sbjct: 36 KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71
>02_05_0547 - 29894421-29894782,29894856-29895045
Length = 183
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 553 GQGLRHPVQPRGRAQGHVLPPHRHVEGDPAAAHR-RPLPVQGGRXLPAGR 699
G GL+ V R G PP +GD AAA PL GGR + R
Sbjct: 121 GGGLKLRVDVRAPVAGTTPPPGSSRKGDRAAAPAPAPLASSGGRGVATSR 170
>01_07_0257 -
42343493-42343528,42344215-42344271,42344272-42344316,
42344374-42344518,42344606-42344733,42344939-42345044,
42345113-42345189,42345264-42345361,42345945-42346058,
42346154-42346294,42346418-42346502,42346721-42346849
Length = 386
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 532 VPVQGDGGQGLRHPVQPRGRAQGHVL---PPHRHVEGDPAAAHRRP 660
+P Q QGLR + G H+ PP++ +E D AAA R P
Sbjct: 279 IPSQYKATQGLRPLEKHAGHVASHLRILPPPNKVLENDNAAASRPP 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,084,052
Number of Sequences: 37544
Number of extensions: 470185
Number of successful extensions: 1764
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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