Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_B18
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 31 1.2
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834 30 2.2
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 29 3.8
07_01_0689 - 5218920-5220107 29 3.8
03_02_0635 + 9994327-9994644,9995510-9995706,9995806-9995941,999... 29 3.8
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 29 3.8
09_04_0563 + 18546967-18547407,18547503-18548007,18548271-185483... 29 5.0
08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626 29 5.0
12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104 28 8.7
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007 28 8.7
07_03_1686 + 28657337-28658668 28 8.7
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 785 CIALDSVCVDAPSSRGVECKTDVAGQQXSPILLTGEE 675
C++ +S CVDA + RG CK G + +P + G E
Sbjct: 273 CVSSNSYCVDATNGRGYRCKCS-DGYKGNPYITDGCE 308
>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
Length = 253
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 785 CIALDSVCVDAPSSRGVECKTDVAGQQXSPILLTGEEXXXXXXXXXVYH 639
CI+ +SVCV++ S G C G Q +P LL G + YH
Sbjct: 161 CISSNSVCVNSSSGPGYICNC-THGYQGNPYLLHGCQDIDECEEHENYH 208
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Frame = +2
Query: 278 CPDGLHFNPSVEWPAYP---CGYPVEVTCVGRGSIQPAQTTPDCPHQYGIFKHPNASPTN 448
C DG NP + + C P + +C G + P DCP Y + ++P
Sbjct: 297 CSDGYQGNPYIRGGCHDIDECKSPQDYSCYGNCNNTPGSHICDCPRGY---ERNASTPNG 353
Query: 449 CGQYRTC 469
C C
Sbjct: 354 CKDIDEC 360
>07_01_0689 - 5218920-5220107
Length = 395
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = -1
Query: 776 LDSVCVDAPSSRGVECKT----DVAGQQXSPILLTG 681
L AP RGVEC T D+A +Q P+L+ G
Sbjct: 199 LSPATTSAPRDRGVECDTIAGFDLATEQWRPVLMDG 234
>03_02_0635 +
9994327-9994644,9995510-9995706,9995806-9995941,
9996019-9996270,9996356-9996588,9996695-9996812,
9996884-9997036,9997126-9997212,9997407-9997697
Length = 594
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 203 NGYYKTDANCDTYIECRDYQATNMICPDGLHFNPSVEWP 319
+G+YK + C Y++ D+ CPDG F+P + P
Sbjct: 428 HGFYKANGGCG-YVKKPDFMMQT--CPDGNVFDPKADLP 463
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 785 CIALDSVCVDAPSSRGVECKTDVAGQQXSPILLTG 681
C++ DS CVD+ + G C AG + +P LL G
Sbjct: 263 CVSRDSECVDSRNGPGYLCNCS-AGFEGNPYLLDG 296
>09_04_0563 +
18546967-18547407,18547503-18548007,18548271-18548314,
18548639-18548734,18548830-18549340,18549506-18549540
Length = 543
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 715 ATSVLHSTPRLDGASTXTESSAMQRKTQ 798
AT +L PR+DGAS+ S+A R+ Q
Sbjct: 190 ATGILQRFPRVDGASSSASSAADAREVQ 217
>08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626
Length = 369
Score = 29.1 bits (62), Expect = 5.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 533 RCDWADLVPSCDAEKFLGFT 592
+CDW ++ C + FLGFT
Sbjct: 167 QCDWHSILKMCQVQGFLGFT 186
>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
Length = 744
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 785 CIALDSVCVDAPSSRGVECKTDVAGQQXSPILLTG 681
CI+ +S C+DA + G C+ G + +P LL G
Sbjct: 273 CISANSYCMDANNGPGYLCQCS-KGYEGNPYLLNG 306
>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
Length = 952
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 83 YAIQRKRMLSYIYLALLVAASHVQSTPAAATAQNVICK-ARNGYYKTDANCDTYIECRDY 259
+ +QR + Y+YLA+++ + + A + + RNG + A+C Y+
Sbjct: 736 FIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSAYLAAVLQ 795
Query: 260 QATNMICPDGLHFNPSVEWPA 322
T ++ + F + + PA
Sbjct: 796 VVTKVVFRRDISFKLTSKLPA 816
>07_03_1686 + 28657337-28658668
Length = 443
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = -2
Query: 538 TAAEVWIEC*SRRAYHVESTTTYACSVLATIGGRSVRMFEDAILVRAIR-CCLGRLDAPS 362
T A V E SR+ Y+ ++C V+ + F DA LV R G+ P+
Sbjct: 200 TPAYVAPEILSRKGYNPAKVDIWSCGVVLFVLAAGYLPFNDASLVNMYRKIYAGKFRCPA 259
Query: 361 SYTCHFNWITARICRPFHA-RIKVQTI 284
++ + RI P A RI + I
Sbjct: 260 WFSPELRCLVRRILDPNPATRIDTEEI 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,302,746
Number of Sequences: 37544
Number of extensions: 611707
Number of successful extensions: 1561
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -