Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B17
         (934 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    52   2e-05
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    49   1e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    49   2e-04
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    48   3e-04
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    36   1.5  
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    33   7.9  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 52.4 bits (120), Expect = 2e-05
 Identities = 24/32 (75%), Positives = 24/32 (75%)
 Frame = -3

Query: 605 PFAGLLLTCSFLRYPLIXWITVLPPLSELIPL 510
           P    LLTCSF  YPLI WITVLPPLSEL PL
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPL 50


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 405 CINESANXRGXAVCXLGALPLPRSLTRCXRSFGCGXRYQL-TQRR*YGYPXNQGITQ 572
           CI + A  R  AV  L ALPL RS TRC RS GCG      +  R YG P  QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +3

Query: 441 VCXLGALPLPRSLTRCXRSFGCGXRYQLT 527
           +C  G +PLPRSLTR  RSFGCG RY+LT
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 48.4 bits (110), Expect = 3e-04
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = +2

Query: 512 AVSAHSKAVIRLSTXSGDNAGKNM 583
           AVSAHSKAVIRLST SGDNAGKNM
Sbjct: 36  AVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 403 SALMNRPTXGXRRFAYW 453
           +ALMNRPT G RRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 33.5 bits (73), Expect = 7.9
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = -1

Query: 475 ERGSGRAPNXQTAXPRXLADSLMQ 404
           +R +  APN QTA PR LADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,048,546
Number of Sequences: 1657284
Number of extensions: 5980408
Number of successful extensions: 10324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10323
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85324527343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)