Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B16
         (888 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    25   1.0  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   3.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.8  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 YYLMPINLPLSLILMLEWL 359
           YYL+ I +P  LI+++ W+
Sbjct: 69  YYLIQIYIPSGLIVIISWV 87


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 542 LLQDIEDDGTLTQLAQAWLNLIQG 613
           L   I++DG    LA  WL+L  G
Sbjct: 55  LTTKIDNDGESISLASGWLDLYLG 78


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 826 PEMRRGERKXEQQVGVLW 773
           P + + E K E+ +G+LW
Sbjct: 813 PAVLQCEAKGEKPIGILW 830


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,251
Number of Sequences: 336
Number of extensions: 3721
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)