Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B16
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    41   2e-04
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    28   2.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   3.6  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    27   3.6  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   8.2  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    26   8.2  

>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = +2

Query: 374 SNEIFLIVAATIYYHEDNYEAALKILHNA-ESLELRAFTLQCLLAMNRPDLARKQLKLLQ 550
           S+ +   + A       +++ A+ +L  + E+LE  A  +   L  ++ + A + LK   
Sbjct: 94  SDSVVQTLGAIFQIKNGSFDDAMDLLKKSVENLEAVALQVYIHLREHKIEAAEQTLKQAL 153

Query: 551 DIEDDGTLTQLAQAWLNLIQGG-PGIQDAHYSVMELS 658
           D  D+  + QLAQ+W+ ++ GG     DA Y   EL+
Sbjct: 154 DWADEEIVLQLAQSWIKIVSGGVESYNDAFYVFEELN 190


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 149 LCFINSLLIISNIKCIFYIEKFINILLMTCHFD 51
           LCF N   +  N++C+ Y+ + IN ++   HF+
Sbjct: 623 LCFANCESM--NVRCLIYVSQTINEIVRVNHFE 653


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 363 VRSCPMKYS*LWLQQFTIMKIIMKLH*KSFI 455
           +R+CP      + QQ +I+ +I++ H +SF+
Sbjct: 857 MRTCPTNILEFYFQQLSILVLIVRQHIRSFL 887


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 434 AALKILHNAESLELRAFTLQCLL---AMNRPDLARKQLKLLQDIEDDGTL 574
           A +K+ H+ + L     T+  L    AM   DL +K  +LLQ I DDG +
Sbjct: 267 AQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV 316


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 182 SNAMHSYIVPTLPRXNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVA 337
           SN+ +S I  T P  +     Q + T+ P  QP+ ++ DYL  + +   ++A
Sbjct: 374 SNSTNSSIPTTYPSNS--TTYQNITTSYPWSQPVVNITDYLSDNGDGHFVLA 423


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +2

Query: 407 IYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQL 583
           ++++   Y+  L +  N  S++    T + LL  N   L+ K LKL ++I+D  TL QL
Sbjct: 381 VHWNSTVYQELLNLKSNNSSVD-GVKTRRQLLEENAL-LSHKVLKLTEEIQDLETLNQL 437


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
 Frame = +2

Query: 302 LLPDANKSA--IVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLEL 475
           L  DA K+A  IV  + ++   G +         +AT+Y+       A+ + H A +L +
Sbjct: 166 LQKDATKAADLIVKALLSKQFNGDDEQKSRLFEQSATLYFQAGTPSYAVPLYHEALNLTM 225

Query: 476 RAFTLQCLLAMNRPDLARKQLKLLQ--DIEDDGTLTQLAQAW 595
              +   L+ MN  +LA   L   +  D +   TL + +Q+W
Sbjct: 226 ANPSCHGLILMN--NLATSLLAQTETVDKKHHETLMKQSQSW 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,935
Number of Sequences: 5004
Number of extensions: 60073
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)