Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_B16
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 99 2e-21
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 99 5e-21
03_06_0191 - 32228642-32228949,32229028-32230567 33 0.40
01_03_0196 - 13696056-13697448,13697676-13697713 30 2.1
01_03_0224 + 13940419-13941786 29 3.7
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 29 6.5
11_01_0505 - 3905715-3905748,3906922-3907358 28 8.6
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 99 bits (238), Expect = 2e-21
Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 1/219 (0%)
Frame = +2
Query: 227 NYRIVQQEL-KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAA 403
+Y++V E+ +A LQ +K L YL D +SAIV+ + ++ SN + ++A
Sbjct: 52 SYQLVISEIDSSAATSLQAVKLLALYLSGD-KESAIVS-LKEWLSDSAVGSNPVLRLIAG 109
Query: 404 TIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQL 583
I+ HE +Y ALK H+ +L+L A +Q + M+R D A KQLK++Q I++D TLTQL
Sbjct: 110 IIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQL 169
Query: 584 AQAWLNLIQGGPGIQDAHYSVMELSERXXXXXXXXXXXXXXXXXXRXMWEXAEQQLTDAA 763
A AWL++ GG I++A+ + +E+ ++ AE L +A
Sbjct: 170 ANAWLDIAVGGSKIREAYLIFQDFAEK-YPMTGMVLNGKAVCCMHMGSFDEAETLLLEAL 228
Query: 764 XRAPQXXXXXXXXXXXXXXXXKPPXVSARYLAXLLDSHP 880
+ + KP S+RYL+ L SHP
Sbjct: 229 NKDAKDPETLANLIVCNLHLGKP---SSRYLSQLKLSHP 264
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 81 DELFDVKNAFYVGNYQQAINEA 146
D LF+++N FY+G YQ AIN +
Sbjct: 5 DLLFNLRNLFYLGAYQAAINNS 26
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 98.7 bits (235), Expect = 5e-21
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Frame = +2
Query: 272 LQPLKSLVDYLLPDAN-KSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKI 448
LQ ++ L YL A K + + ++ +A SN I +VA T+ HE +Y ALK
Sbjct: 75 LQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKH 134
Query: 449 LHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQ 628
++ ++EL A +Q L M+R D A KQL+++Q +++D TLTQLA AW++L+ GG IQ
Sbjct: 135 TNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQ 194
Query: 629 DAHYSVMELSER 664
+AH +LSE+
Sbjct: 195 EAHLIFQDLSEK 206
Score = 31.5 bits (68), Expect = 0.93
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 81 DELFDVKNAFYVGNYQQAINEAQSV 155
D LF ++N+FYVG YQ I Q++
Sbjct: 8 DHLFGLRNSFYVGAYQAVITGVQAI 32
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 32.7 bits (71), Expect = 0.40
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = +2
Query: 254 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 433
K P + S+++ L + V V + TE+++ + + + + N++
Sbjct: 459 KGVSPDVTTYTSVINMLCQEKKYEQAVEIFTKCVVQDTEVASSVLTVFILALC-KQGNFK 517
Query: 434 AALKILH----NAESLELRAFTLQCLLAMNRPDLARKQLKLLQ 550
AL +L N ES+ L+CL+ + DLA + +K ++
Sbjct: 518 GALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIR 560
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +2
Query: 413 YHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLK 541
YH + ++++K LH+ + L + A + C+++ P L ++ K
Sbjct: 16 YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58
>01_03_0224 + 13940419-13941786
Length = 455
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 485 TLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 619
T +CL+ RP LAR L ++ D+ G ++ W + + GGP
Sbjct: 368 TAECLVLRRRPRLARTNLFVVTDVRRVG-FDRVDFGWGDPVYGGP 411
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 242 QQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHE 421
Q+E++T D Q L DY +PD AI D+D ++ + + + + +V T +Y
Sbjct: 1317 QKEIQTGDTPHQELLDNRDYTIPDGAIVAI-RDLDQQMYVSIKNTGKKYQVV-GTYHYSL 1374
Query: 422 DNYEAALKILHN 457
+ A K+ H+
Sbjct: 1375 SSECALFKVKHH 1386
>11_01_0505 - 3905715-3905748,3906922-3907358
Length = 156
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 344 QYQRQWQIYWHQVVSNLPNSSMA 276
Q + + +++WH VVS PNS++A
Sbjct: 26 QRETKLRVFWHDVVSGGPNSTVA 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,403,748
Number of Sequences: 37544
Number of extensions: 412098
Number of successful extensions: 941
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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