Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B16
         (888 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145691-1|AAD38666.1|  306|Drosophila melanogaster BcDNA.LD2988...    98   2e-20
AE014134-1103|AAF52392.1|  306|Drosophila melanogaster CG9543-PA...    98   2e-20
L42511-1|AAC41607.1|  224|Drosophila melanogaster shortsighted c...    31   1.6  
AF003342-1|AAB61239.1|  225|Drosophila melanogaster bunched prot...    31   1.6  
AE014134-2215|AAF53200.2|  219|Drosophila melanogaster CG5461-PB...    31   1.6  

>AF145691-1|AAD38666.1|  306|Drosophila melanogaster BcDNA.LD29885
           protein.
          Length = 306

 Score = 97.9 bits (233), Expect = 2e-20
 Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
 Frame = +2

Query: 233 RIVQQELKTADPM-LQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATI 409
           RIV  ++K  +   LQ L+ + +     +    ++  +  +VA G E    I+ +  A +
Sbjct: 59  RIVASDIKEGNSTPLQALRLVHEAFEQPSRTEELLEKLTDKVA-GEEDETNIWHLATAIV 117

Query: 410 YYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQ 589
           Y H+  +E ALKILH + +LE  A ++QCLL + R DLA++ +  +Q+I DD TLTQLAQ
Sbjct: 118 YCHDGQFENALKILHGSTNLESMALSVQCLLRLQRVDLAKQLVAKMQEISDDATLTQLAQ 177

Query: 590 AWLNLIQGGPGIQDAHYSVMELSER 664
           AW+ L QG   +QDA +   E  E+
Sbjct: 178 AWVALAQGTEQMQDAFHIYQEFCEK 202



 Score = 30.7 bits (66), Expect = 2.8
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 57  MARHQQDVDE---LFDVKNAFYVGNYQQAIN 140
           M+R Q + D    LFD +N +Y+GN+  +IN
Sbjct: 1   MSRQQNEEDTNSVLFDARNEYYIGNFMGSIN 31


>AE014134-1103|AAF52392.1|  306|Drosophila melanogaster CG9543-PA
           protein.
          Length = 306

 Score = 97.9 bits (233), Expect = 2e-20
 Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
 Frame = +2

Query: 233 RIVQQELKTADPM-LQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATI 409
           RIV  ++K  +   LQ L+ + +     +    ++  +  +VA G E    I+ +  A +
Sbjct: 59  RIVASDIKEGNSTPLQALRLVHEAFEQPSRTEELLEKLTDKVA-GEEDETNIWHLATAIV 117

Query: 410 YYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQ 589
           Y H+  +E ALKILH + +LE  A ++QCLL + R DLA++ +  +Q+I DD TLTQLAQ
Sbjct: 118 YCHDGQFENALKILHGSTNLESMALSVQCLLRLQRVDLAKQLVAKMQEISDDATLTQLAQ 177

Query: 590 AWLNLIQGGPGIQDAHYSVMELSER 664
           AW+ L QG   +QDA +   E  E+
Sbjct: 178 AWVALAQGTEQMQDAFHIYQEFCEK 202



 Score = 30.7 bits (66), Expect = 2.8
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 57  MARHQQDVDE---LFDVKNAFYVGNYQQAIN 140
           M+R Q + D    LFD +N +Y+GN+  +IN
Sbjct: 1   MSRQQNEEDTNSVLFDARNEYYIGNFMGSIN 31


>L42511-1|AAC41607.1|  224|Drosophila melanogaster shortsighted
           class 1 protein.
          Length = 224

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 27/97 (27%), Positives = 45/97 (46%)
 Frame = +2

Query: 254 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 433
           K  DP+ + +   +DY LPDA+ ++ VA ID ++ +  +L     +I  A     E   E
Sbjct: 28  KQQDPVREVVMKYIDYFLPDASGTSAVA-IDNKIEQAMDLVKSHLMI--AVREEVEVLKE 84

Query: 434 AALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKL 544
              +++     LEL       +L  N P    +QL+L
Sbjct: 85  RISELMDKINKLELE----NSILKSNIPQETLQQLQL 117


>AF003342-1|AAB61239.1|  225|Drosophila melanogaster bunched
           protein.
          Length = 225

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 254 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLI 394
           K  DP+ + +   +DY LPDA+ ++ VA ID ++ +  +L     +I
Sbjct: 29  KQEDPVCEVVMKYIDYFLPDASGTSAVA-IDNKIEQAMDLVKSHLMI 74


>AE014134-2215|AAF53200.2|  219|Drosophila melanogaster CG5461-PB,
           isoform B protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 27/97 (27%), Positives = 45/97 (46%)
 Frame = +2

Query: 254 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 433
           K  DP+ + +   +DY LPDA+ ++ VA ID ++ +  +L     +I  A     E   E
Sbjct: 28  KQQDPVREVVMKYIDYFLPDASGTSAVA-IDNKIEQAMDLVKSHLMI--AVREEVEVLKE 84

Query: 434 AALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKL 544
              +++     LEL       +L  N P    +QL+L
Sbjct: 85  RISELMDKINKLELE----NSILKSNIPQETLQQLQL 117


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,645,414
Number of Sequences: 53049
Number of extensions: 715627
Number of successful extensions: 1908
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1908
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4332305172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)