Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_B16
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical pr... 65 6e-11
Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical pr... 31 1.5
U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical p... 30 2.5
Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80838-3|AAC71113.1| 453|Caenorhabditis elegans Abnormal cell l... 29 4.4
U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell l... 29 4.4
AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich ... 29 4.4
AF183400-1|AAF13188.1| 453|Caenorhabditis elegans LIN-42 protein. 29 4.4
U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeas... 29 5.9
U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeas... 29 5.9
U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeas... 29 5.9
>Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical
protein F45G2.4 protein.
Length = 292
Score = 65.3 bits (152), Expect = 6e-11
Identities = 53/210 (25%), Positives = 91/210 (43%)
Frame = +2
Query: 254 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 433
K+AD L ++ ++ A K I+A++ VA + +EI ++AATI D +
Sbjct: 64 KSAD--LAAVRRYAEFRNNPAAKKKILAEVQEEVAS-RNIKSEIAAVLAATILNEADLSQ 120
Query: 434 AALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQG 613
A + + E LE RA + L+ MN+ LA ++K + I++D TL+QLA A +
Sbjct: 121 DAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGA 180
Query: 614 GPGIQDAHYSVMELSERXXXXXXXXXXXXXXXXXXRXMWEXAEQQLTDAAXRAPQXXXXX 793
++DA Y E+S++ + + AE+ L A R +
Sbjct: 181 SGKVKDALYIYSEMSDKYGRTTDLEMHQAVVSILTQD-YAAAEELLESALERDNKDADVL 239
Query: 794 XXXXXXXXXXXKPPXVSARYLAXLLDSHPS 883
K V R+++ L HP+
Sbjct: 240 INSIVSAQLNEKDDDVVERFISQLKHEHPN 269
>Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical
protein C07E3.8 protein.
Length = 294
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 419 EDNYEAALKILHNAESLELRAFTLQCLLAMNR 514
E +E + H+ ESLE+ +FT+ CLL NR
Sbjct: 117 EGVFETPFEKPHHFESLEITSFTIDCLLYGNR 148
>U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical
protein F08D12.1 protein.
Length = 694
Score = 29.9 bits (64), Expect = 2.5
Identities = 30/104 (28%), Positives = 51/104 (49%)
Frame = +2
Query: 203 IVPTLPRXNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNE 382
I P +P +++I Q +L + L + + LL + + A ++ VAK S +
Sbjct: 334 IPPKIPNFSFQIDQTKLTRRQRLTLMLNNALVLLLSNQREPCKRA-LEELVAKFGS-SKD 391
Query: 383 IFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNR 514
+ LI AT+++ + EAALK+L ++ LE L LL R
Sbjct: 392 VALI-EATLHFKMGDAEAALKVLAGSD-LEQSLARLHVLLNAGR 433
>Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical
protein C50H2.1 protein.
Length = 929
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 284 SMAVA*DLQSLVLVALSCSXPWAM*ERYRNASRWSAXQGCRRANALC-FINSLLIIS 117
+M+VA + + L L+ + E YR+A W GCR A L F + L IIS
Sbjct: 471 NMSVADMVTGIYLAVLAIADAKMSDEYYRHAVWWQTGWGCRAAGFLAVFASELGIIS 527
>U80838-3|AAC71113.1| 453|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform c protein.
Length = 453
Score = 29.1 bits (62), Expect = 4.4
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Frame = +2
Query: 170 PG*HSNAMHSYIV----PTLPRXNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVA 337
P HS+A H+ +V PT P+ +++E T P S V++ L DA+ + ++
Sbjct: 3 PAGHSSATHNIVVPNANPTQPQPLAPAMREEGATLSPPNTWSSSSVEF-LDDADDNRLLF 61
Query: 338 DIDARVAKGTELSNEIFLIVAATIYYH-EDNYEAALKILHNAESLELRAFTL-QCLLA-M 508
+ GT LS+ + Y DN+ A L+ + L A ++ Q + A +
Sbjct: 62 TCTFTLPHGTVLSSATYADGFHEQYLTIGDNFLARLEPKGQSFILSAAAASVKQRIFARV 121
Query: 509 NRPDLARKQLKLLQDIEDD-GTLTQLA 586
PD A + +LL + E D +T LA
Sbjct: 122 TMPDGALRACELLCEFETDRAKITVLA 148
>U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform b protein.
Length = 597
Score = 29.1 bits (62), Expect = 4.4
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Frame = +2
Query: 170 PG*HSNAMHSYIV----PTLPRXNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVA 337
P HS+A H+ +V PT P+ +++E T P S V++ L DA+ + ++
Sbjct: 3 PAGHSSATHNIVVPNANPTQPQPLAPAMREEGATLSPPNTWSSSSVEF-LDDADDNRLLF 61
Query: 338 DIDARVAKGTELSNEIFLIVAATIYYH-EDNYEAALKILHNAESLELRAFTL-QCLLA-M 508
+ GT LS+ + Y DN+ A L+ + L A ++ Q + A +
Sbjct: 62 TCTFTLPHGTVLSSATYADGFHEQYLTIGDNFLARLEPKGQSFILSAAAASVKQRIFARV 121
Query: 509 NRPDLARKQLKLLQDIEDD-GTLTQLA 586
PD A + +LL + E D +T LA
Sbjct: 122 TMPDGALRACELLCEFETDRAKITVLA 148
>AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich
repeat-containingG protein-coupled receptor protein.
Length = 929
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 284 SMAVA*DLQSLVLVALSCSXPWAM*ERYRNASRWSAXQGCRRANALC-FINSLLIIS 117
+M+VA + + L L+ + E YR+A W GCR A L F + L IIS
Sbjct: 471 NMSVADMVTGIYLAVLAIADAKMSDEYYRHAVWWQTGWGCRAAGFLAVFASELGIIS 527
>AF183400-1|AAF13188.1| 453|Caenorhabditis elegans LIN-42 protein.
Length = 453
Score = 29.1 bits (62), Expect = 4.4
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Frame = +2
Query: 170 PG*HSNAMHSYIV----PTLPRXNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVA 337
P HS+A H+ +V PT P+ +++E T P S V++ L DA+ + ++
Sbjct: 3 PAGHSSATHNIVVPNANPTQPQPLAPAMREEGATLSPPNTWSSSSVEF-LDDADDNRLLF 61
Query: 338 DIDARVAKGTELSNEIFLIVAATIYYH-EDNYEAALKILHNAESLELRAFTL-QCLLA-M 508
+ GT LS+ + Y DN+ A L+ + L A ++ Q + A +
Sbjct: 62 TCTFTLPHGTVLSSATYADGFHEQYLTIGDNFLARLEPKGQSFILSAAAASVKQRIFARV 121
Query: 509 NRPDLARKQLKLLQDIEDD-GTLTQLA 586
PD A + +LL + E D +T LA
Sbjct: 122 TMPDGALRACELLCEFETDRAKITVLA 148
>U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform b
protein.
Length = 681
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 397
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 370 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 421
Query: 398 AATIYYHEDNYEAALKILHNAESLEL 475
A +Y +E YE+ALKIL + + ++
Sbjct: 422 LAHLYLYERKYESALKILMSCQDFQI 447
>U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform a
protein.
Length = 759
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 397
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 370 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 421
Query: 398 AATIYYHEDNYEAALKILHNAESLEL 475
A +Y +E YE+ALKIL + + ++
Sbjct: 422 LAHLYLYERKYESALKILMSCQDFQI 447
>U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform c
protein.
Length = 807
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 397
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 418 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 469
Query: 398 AATIYYHEDNYEAALKILHNAESLEL 475
A +Y +E YE+ALKIL + + ++
Sbjct: 470 LAHLYLYERKYESALKILMSCQDFQI 495
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,857,750
Number of Sequences: 27780
Number of extensions: 352486
Number of successful extensions: 912
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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