Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B16
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   1.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   1.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   1.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.6  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 YYLMPINLPLSLILMLEWL 359
           YYL+ I +P  LI+++ W+
Sbjct: 222 YYLIQIYIPSGLIVIISWV 240


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 YYLMPINLPLSLILMLEWL 359
           YYL+ I +P  LI+++ W+
Sbjct: 222 YYLIQIYIPSGLIVIISWV 240


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 YYLMPINLPLSLILMLEWL 359
           YYL+ I +P  LI+++ W+
Sbjct: 161 YYLIQIYIPSGLIVIISWV 179


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 300 TYYLMPINLPLSLILMLEWL 359
           +YYL+ I +P  +++++ W+
Sbjct: 242 SYYLIQIYIPCCMLVIVSWV 261


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 300 TYYLMPINLPLSLILMLEWL 359
           +YYL+ I +P  +++++ W+
Sbjct: 242 SYYLIQIYIPCCMLVIVSWV 261


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 YYLMPINLPLSLILMLEWL 359
           Y+L+ + +P  LI++L W+
Sbjct: 246 YFLIQVYVPCVLIVVLSWV 264


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 497 LLAMNRPDLARKQLKLLQDIEDD 565
           +L M   DL +KQLK L+D E++
Sbjct: 365 ILRMLIIDLRKKQLKSLEDWENE 387


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 663 VSVHWDLVRPPSV 701
           +SV WD+++ P+V
Sbjct: 198 ISVEWDIIKVPAV 210


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 303 YYLMPINLPLSLILMLEWL 359
           YYL    +P  LI+++ W+
Sbjct: 246 YYLFHTYIPTCLIVIMSWV 264


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 482 MLLVPAIQHYEGFLMQLHNYLHDSKLLQPQSRI 384
           +L  P+I+ Y     Q   Y+HD+  +QPQ ++
Sbjct: 449 ILQQPSIRTYT---QQQFPYVHDTLQIQPQEQL 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,228
Number of Sequences: 438
Number of extensions: 4030
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)