Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B15
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    28   2.1  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    27   3.6  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   8.3  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.3  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -2

Query: 773 GGEXHIHRTEIPTA*AMRKRHASRREKGGQV---SGKRQGRNRRAHEGASR 630
           GG   +   + P       +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 76  GGVLRVEWAKQPPPSGPGSKRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 636 SSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSVYVSFASK 776
           S+++ +   TL   GY++  L S   +L  S RC +L + Y  F ++
Sbjct: 233 STVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQ 279


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +1

Query: 730 HAVGISVRCMCXSPPSWAVCTNPPVQPXRVPLIRVTIXFXXPP 858
           H  G  V      PPS+A  T P  Q    P+   +     PP
Sbjct: 202 HMTGAYVNTPLNQPPSYAASTQPEFQQTTSPIFSSSSTPPPPP 244


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +3

Query: 555 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 683
           ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,834
Number of Sequences: 5004
Number of extensions: 67399
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)