Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_B15
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0154 - 1775693-1775942,1776834-1777588 32 0.54
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.6
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 29 5.0
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.7
06_03_0218 + 18219956-18220555 28 8.7
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.7
03_04_0061 - 16949038-16950006 28 8.7
01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799... 28 8.7
>04_01_0154 - 1775693-1775942,1776834-1777588
Length = 334
Score = 32.3 bits (70), Expect = 0.54
Identities = 36/119 (30%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Frame = -1
Query: 843 GDSYPDKGHPXGLNGGVR------AHSPAWRRXTHTPN*DTYSVSYEKAPRFPKGERRTG 682
G++ P HP G+ GG A A P+ D S + APR P ER G
Sbjct: 25 GENVPAAEHPLGVGGGATHARRKVAAGAAGGADAVAPDADPASPVEDLAPRRPDRERGGG 84
Query: 681 ---IR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 514
R AA S + RG G P G L + ARQ GGA + + R
Sbjct: 85 GAARRRAASSSRRRRRGKSVG-GPSSRRRRRGKTAGGLKLPTTAARQDGGATRRNSSRR 142
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +1
Query: 520 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 678
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>12_02_0692 -
22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 29.1 bits (62), Expect = 5.0
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = +2
Query: 560 SQKSTLKSEVAKPDRTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGAFS*LTL* 739
S K ++ K + + P +P LPRAL+ AA R+P+ P +R
Sbjct: 164 SGKGNHRNRKRKSHQQRQSPAAAPSLLPRALALLADAAGRLPLGEHPDARRSLVD-TAAE 222
Query: 740 VSQFGVCVXRLQAGLCARTPP 802
++ F V V L +G A P
Sbjct: 223 LAAFDVLVAVLGSGYYAEAMP 243
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 352 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 507
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 707 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 612
+RRE+ + +G KR+GR R G RGKR S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 728 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 627
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 602 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 718
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
>01_06_1440 + 37378121-37378958,37379344-37379494,37379567-37379936,
37380021-37380431,37380522-37380820,37380897-37381155,
37381248-37381497,37381744-37381875,37381936-37382208,
37383023-37383267
Length = 1075
Score = 28.3 bits (60), Expect = 8.7
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Frame = +1
Query: 541 SAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRF 720
+ P +T +R + R+D + + + PL A P + PP R ++
Sbjct: 973 AVPPDRLTYSHGHIRA-QGRRDREHSTKSPLRR---AARGPPAKFHAPSPPICRRPPAQY 1028
Query: 721 LIAHAVG-ISVRCMCXSPPSWAVCTNPPVQ 807
I A G C PPS +C PP Q
Sbjct: 1029 KITLAEGGKGAACKFPCPPSPPICRRPPAQ 1058
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,115,473
Number of Sequences: 37544
Number of extensions: 553201
Number of successful extensions: 1737
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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