Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B15
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.64 
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 607 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 729
           Y+  R+F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 739 GISVRCMCXSPPSWAVCTNPPVQPXRVPL 825
           G ++ C C  PP   VC  PP  P  +P+
Sbjct: 234 GCNMGCSCLPPPPSPVCMPPPPPPCPMPI 262


>Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical
           protein F28C6.4b protein.
          Length = 689

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 648 RSPVPTLP-LTGYLSAFLPSGSVALSHSSRCRYLSSVYVSFASKLG 782
           R P  TLP +T YL+  LPS    L++ +     ++ ++S   K+G
Sbjct: 95  RMPTVTLPRITAYLTGTLPSFGTVLTNLATAEMKTANWISRIQKIG 140


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 648 RSPVPTLP-LTGYLSAFLPSGSVALSHSSRCRYLSSVYVSFASKLG 782
           R P  TLP +T YL+  LPS    L++ +     ++ ++S   K+G
Sbjct: 95  RMPTVTLPRITAYLTGTLPSFGTVLTNLATAEMKTANWISRIQKIG 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,152,010
Number of Sequences: 27780
Number of extensions: 423489
Number of successful extensions: 1134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)