Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_B14
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 93 2e-19
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 33 0.40
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 30 2.9
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 29 3.8
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 6.6
04_03_0641 + 18261332-18262423 28 8.7
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 8.7
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 93.5 bits (222), Expect = 2e-19
Identities = 59/140 (42%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Frame = +3
Query: 228 W*REHRXDIQIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLK 401
W + D+ I G NPSAE DEG D VDIV RL E F DKK + ++K
Sbjct: 35 WVVQGAIDVDI-GANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMK 92
Query: 402 DYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRD 581
Y+K L AKL+ ++ E FK N+ K +LG+ K+LQFF GESM DG + Y+
Sbjct: 93 RYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK- 148
Query: 582 FDGTQIPIMMFFKHGLXEEK 641
DG P ++F HGL E K
Sbjct: 149 -DGATDPTFLYFSHGLKEVK 167
Score = 35.9 bits (79), Expect = 0.043
Identities = 13/38 (34%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +2
Query: 128 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTR 238
M +Y+D++TGDE+ SD++ + ++ +++EV G+ V +
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQ 38
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 32.7 bits (71), Expect = 0.40
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -3
Query: 572 FHHGNHAITIHGLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 438
FHH H ++ PSK+L ++L+ FH F ++C++Y + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 369 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 542
G +K TL L++Y+ +V A L+ +Q+E FK +NKV K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194
Query: 543 D 545
+
Sbjct: 1195 E 1195
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 237 EHRXDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKK 380
+ + + I N S EE +E ++A VD+ LN +E +G+KK
Sbjct: 706 QEKFSVSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 342 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 521
H L+ A D S +L ++++ V +E+A Q+EV K + K+I EL
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236
Query: 522 FFTGE 536
+ E
Sbjct: 237 VLSKE 241
>04_03_0641 + 18261332-18262423
Length = 363
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 633 EEKF*MLDKKYSIIPNWRLD-TXVXLFIYQSCPASW 737
EE+ M +++ ++P+W L + ++ QSCP SW
Sbjct: 28 EEQLQMTEEQIELLPHWNLQHLTIEYYLGQSCP-SW 62
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 444 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 346
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,489,626
Number of Sequences: 37544
Number of extensions: 353686
Number of successful extensions: 813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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