Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_B12
(935 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.006
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.10
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.2
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 2.9
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 27 2.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.8
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.0
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 5.0
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 26 6.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.3 bits (80), Expect = 0.006
Identities = 19/54 (35%), Positives = 19/54 (35%)
Frame = +2
Query: 764 PPXPQKXXXGGXPGGXPXXXPPXXPPPXXXGXXPXPPPXGGGGGXXXPPXXGXP 925
PP P P P PP P P G P PPP G G PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPP--PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 31.9 bits (69), Expect = 0.13
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -1
Query: 935 PPPGXXPXGGXXXPPPPPPGGGXXXXPP 852
PPP P G PPPPPPG PP
Sbjct: 752 PPPA--PIMGGPPPPPPPPGVAGAGPPP 777
Score = 29.1 bits (62), Expect = 0.94
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -1
Query: 896 PPPPPPGGGXXXXPPXXXGGXXXGGPXXGXPRGXPPXXFFGXGGGXPPP 750
PPPPPP P G P PP G G PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.10
Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Frame = +2
Query: 764 PPXPQKXXXGGXP---GGXPXXXPPXXPPPXXXGXXPXPPPXGGGGGXXXPPXXGXPRGG 934
PP P + G P G PP PPP P P G PP P G
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/62 (30%), Positives = 19/62 (30%)
Frame = -1
Query: 935 PPPGXXPXGGXXXPPPPPPGGGXXXXPPXXXGGXXXGGPXXGXPRGXPPXXFFGXGGGXP 756
PP G PPPPPP P G P PR P G P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG--RSAPPPPPPRSAPST------GRQP 376
Query: 755 PP 750
PP
Sbjct: 377 PP 378
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Frame = +3
Query: 759 AXPPXPKKXXXGXPPGXXPPGXPPVXPPXXXXGXXXXPP--PXGGGGGXXXPP 911
A PP PP PP PP PP PP P G PP
Sbjct: 402 ALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPS---APPSLPMGAPAAPPLPP 451
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Frame = -1
Query: 932 PPGXXPXGGXXXPPP-PPPGGGXXXXPP 852
PP P PPP PPP G PP
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPP 268
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Frame = -1
Query: 896 PPPPPPGGGXXXXPPXXXGGXXXGGPXXGXP-----RGXPPXXFFGXGGGXPPP 750
PPPPPP PP G P P G P G PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/50 (26%), Positives = 13/50 (26%)
Frame = +1
Query: 763 PPPXPKKXXGGXPRGXPXXGPPXXXPPXXXGGXXXXPPPGGGGGGXXXPP 912
PPP G P P PP PPP PP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPP 389
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 935 PPPGXXPXGGXXXPPPPPPGG 873
PPPG P PPPPPP G
Sbjct: 14 PPPGFEPPS---QPPPPPPPG 31
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 932 PPGXXPXGGXXXPPPPPPGGGXXXXPP 852
PPG P PPPPPPG PP
Sbjct: 5 PPGNPP------PPPPPPGFEPPSQPP 25
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 756 GAXPPXPKKXXXGXPPGXXPPGXPPVXPP 842
G PP P PPG PP PP PP
Sbjct: 7 GNPPPPPP------PPGFEPPSQPPPPPP 29
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 813 PPGXPPVXPPXXXXGXXXXPPP 878
PPG PP PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP 26
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/60 (31%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Frame = +3
Query: 765 PPXPKKXXXGXPPGXXPPGXPPV------XPPXXXXGXXXXPPPXGGGGGXXXPPXGXXP 926
PP PK PP P G PPV PP P P G PP P
Sbjct: 1140 PPVPKPSVAA-PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 759 AXPPXPKKXXXGXPPGXXPPGXPPVXPP 842
A PP PK PP P G PPV P
Sbjct: 1100 AAPPVPKPSV-AVPPVPAPSGAPPVPKP 1126
Score = 25.8 bits (54), Expect = 8.8
Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +3
Query: 759 AXPPXPKKXXXGXPPGXXPP-GXPPVXPPXXXXGXXXXPPPXGGGGGXXXPPXGXXP 926
A PP P G PP P G PPV PP P P G PP P
Sbjct: 1167 AAPPVPAPSS-GIPPVPKPAAGVPPVPPP-----SEAPPVPKPSVGVPPVPPPSTAP 1217
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 935 PPPGXXPXGGXXXPPPPPP 879
P G GG PPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPP 313
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 829 GGXPGGXXPGGXPXXXFLGXGGXAP 755
GG PGG PGG G GG P
Sbjct: 444 GGFPGGGFPGGSYNSQGFGMGGGFP 468
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +3
Query: 759 AXPPXPKKXXXGXPPGXXPPGXPPVXPPXXXXGXXXXPPPXGGGGGXXXPPXG 917
A PP PP PP PP PP PPP P G
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPP--PPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/49 (30%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Frame = +2
Query: 791 GGXPGGXPXXXPPXXP----PPXXXGXXPXPPPXGGGGGXXXPPXXGXP 925
GG P PP P PP P PPP PP P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Frame = -3
Query: 909 GGXXXPPPPPXG----GGXGXSPXXXGG-GXXGGXXXGXPPG 799
GG PPP P G GG G GG G GG G G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG 236
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = +3
Query: 765 PPXPKKXXXGXPPGXXPPGXPPVXPPXXXXGXXXXPPPXGGGGGXXXPPXGXXP 926
P + G P G P G + P G PPP G G G PP G P
Sbjct: 98 PGVARPAGRGIPLGQAPVG---LAGPVRGVGYTAPPPPAGFGRGA--PPPGFRP 146
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 29 YGAFLXXFXLCYFFXXFLNXFFS 97
+ AFL +C+ F FLN FS
Sbjct: 86 FRAFLSFLSICFLFISFLNFIFS 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.152 0.519
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,866
Number of Sequences: 5004
Number of extensions: 33305
Number of successful extensions: 299
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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