Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B12
         (935 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.32 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 12/40 (30%), Positives = 14/40 (35%)
 Frame = +3

Query: 765 PPXPKKXXXGXPPGXXPPGXPPVXPPXXXXGXXXXPPPXG 884
           P  P++     P    PPG PP  PP          P  G
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70



 Score = 25.0 bits (52), Expect = 0.99
 Identities = 15/55 (27%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
 Frame = -1

Query: 917 PXGGXXXPPPPP---PGGGXXXXPPXXXGGXXXGGPXXGXPRGXPPXXFFGXGGG 762
           P  G   P P P   P       PP    G   GGP    P   P         G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/24 (45%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
 Frame = +2

Query: 758 GXPPXP-QKXXXGGXPGGXPXXXP 826
           G PP P Q    GG PG  P   P
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 917  PXGGXXXPPPPPP 879
            P  G   PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 927  RGXPXXGGXXXPPPPP 880
            R  P  G    PPPPP
Sbjct: 1849 RNIPVSGSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 871  PPPGGGGGGXXXPPXG 918
            P PG G  G   PP G
Sbjct: 1749 PHPGNGHSGTMGPPVG 1764


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 896  PPPPPPGGG 870
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 894 PPPPPXGGG 868
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.152    0.519 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,725
Number of Sequences: 438
Number of extensions: 6372
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)