Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B11
         (930 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    48   5e-04
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    46   0.001
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    38   0.28 
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    35   3.4  

>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 47.6 bits (108), Expect = 5e-04
 Identities = 27/37 (72%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
 Frame = +3

Query: 681 SLTXCXRSF-GXRXXVSAHSKAVIRLSTXSGDNAGKN 788
           SLT   RS    R  VSAHSKAVIRLST SGDNAGKN
Sbjct: 22  SLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKN 58


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 46.4 bits (105), Expect = 0.001
 Identities = 21/29 (72%), Positives = 21/29 (72%)
 Frame = -1

Query: 798 LXXCFFLRYPLIXWITVLPPLSELIPLTA 712
           L  C F  YPLI WITVLPPLSEL PL A
Sbjct: 24  LLTCSFRLYPLILWITVLPPLSELTPLAA 52


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 38.3 bits (85), Expect = 0.28
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +1

Query: 406 DPDMIXYXDXFGQTTTRMQ 462
           DPDMI Y D FGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 34.7 bits (76), Expect = 3.4
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +3

Query: 846 RFSIGXXPLTXIKKIXXQFKGGXTRXE 926
           RFSIG  PLT I KI  Q +GG TR +
Sbjct: 15  RFSIGSAPLTSITKIDAQVRGGETRQD 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,108,997
Number of Sequences: 1657284
Number of extensions: 9833521
Number of successful extensions: 23245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23242
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 85670899699
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)