Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B09
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    29   1.2  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   2.2  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    27   5.0  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   5.0  

>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 477 FSIASSFPSSTTTGAFSTFPGSLLSHVPQIF-YLSY-TDRFNQRTTMSIRERSF 322
           FS+  +      + AFSTF   LL+H  Q+  ++SY  D F ++ T+ ++  ++
Sbjct: 166 FSLIQASSFDMASDAFSTFKSILLNHKSQVAEFISYHFDEFFKQYTVLLKSENY 219


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 498 SLDTGG*FSIASSF-PSSTTTGAFSTFPGSLLSHVPQIFYLSYTDRFNQRTTMSIRERSF 322
           S +  G FS++ +  P++  T +FST PG L + +    + S  D  + +T  S   RS+
Sbjct: 593 SRNASGNFSMSQTHQPTTDNTSSFSTQPGRLSTGLHH--FPSDRDLLSNQTRRSSLARSY 650

Query: 321 KF 316
           +F
Sbjct: 651 RF 652


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 304 KKIREFKTPFTNRHGSSLVEPISVRKIENLRNMGQQTSRKSGECTCGCGAWER 462
           + +R F+TP  N HG S     + +K+E +   G++T   +G  +    A  R
Sbjct: 6   RNLRRFQTPRRNLHGIS----YTPKKVEGVSFAGRETPTATGSLSVVINAGSR 54


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 324 FKFAYFLNFCRFSSRRMFIYKKFVCKISHGTLNLSIVHF 208
           F+ +  +N+  FS++       F+CKIS    NL  VHF
Sbjct: 77  FETSVGMNWKSFSNKEKESVTSFLCKISLEDNNLLSVHF 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,872
Number of Sequences: 5004
Number of extensions: 61434
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)