Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B09
         (937 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   1.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   2.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.2  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 331 FTNRHGSSLVEPISVRKIENLRNMGQ--QTSRKSGECTC 441
           FT  H   + E + +  IENLRN  +    +R   EC C
Sbjct: 323 FTTVHRICIGETMPMELIENLRNHPEYIDETRNYQECKC 361


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 416 EVCCPMFLRFSIFRTLIGSTSELPC 342
           EV CP++    +   +I S  EL C
Sbjct: 316 EVLCPLYKYLQLIENVIPSNEELIC 340


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 416 EVCCPMFLRFSIFRTLIGSTSELPC 342
           EV CP++    +   +I S  EL C
Sbjct: 331 EVLCPLYKYLQLIENVIPSNEELIC 355


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 126 FLSKIVKVTL*ILNYSLINISRNHNE 203
           FLS I  V   I +  L+N+S NH E
Sbjct: 537 FLSDINGVFTSIASLLLLNLSENHIE 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,971
Number of Sequences: 438
Number of extensions: 3761
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)