Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B07
         (1023 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302...    29   7.9  

>03_01_0389 +
           3021849-3022136,3022237-3022753,3022835-3022988,
           3023076-3023166,3024556-3024627,3026366-3026689
          Length = 481

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 689 PXXXXPXPSXLXPTXXPPXXXPRCANLP 772
           P    P P+ L PT  PP   P+ A LP
Sbjct: 66  PGLASPPPTTLTPTPMPPKASPKVAPLP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,623,296
Number of Sequences: 37544
Number of extensions: 98233
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3001039372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)