Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B06
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    34   0.024
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    27   3.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   4.8  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   4.8  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   8.5  

>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 529 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYA 627
           +S   I  H+ +Y KP LQ+ ++RIL M+ IY+
Sbjct: 19  LSCISIITHLKNYKKPVLQRSVVRILMMIVIYS 51



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 675 DSLRECYEAYVIYNFMKYLLNYL 743
           +  RE YEA+ +Y F   L++YL
Sbjct: 68  EPFREIYEAFALYCFFCLLIDYL 90


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 765 AVLETNLSISYIPCVATXEWED 830
           A+L+  +S+ YIPC     W++
Sbjct: 110 ALLDAGISLKYIPCAINCHWKN 131


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 44  FDNIHNFSQIAVSVCQLHSYYTLLCSKQVYIRNNFI 151
           F N+ NFS+I V     + YY+   S  +Y +N  I
Sbjct: 331 FHNVTNFSRIWVMHISAYWYYSAYNSPNLYTKNYHI 366


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 426 GASAYINSTFYKQWVQEIRSRST 494
           G SA + +TF  +W QE+ S ST
Sbjct: 318 GTSATLFNTFLLEWSQEVTSNST 340


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 699 AYVIYNFMKYLLNYLNDGHD 758
           ++ +YN   YL+ YL+D +D
Sbjct: 325 SFQLYNLFPYLIRYLSDDYD 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,560
Number of Sequences: 5004
Number of extensions: 61445
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)