Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B06
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0019 + 16500877-16501029,16501184-16501240,16501560-165016...    47   2e-05
03_06_0530 - 34545699-34546013,34546121-34546354,34547006-345470...    43   3e-04
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    39   0.006
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313...    37   0.025
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668...    37   0.025
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272...    36   0.033
07_01_0961 + 8070992-8071015,8071016-8071089,8073051-8073200,807...    33   0.24 
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926...    33   0.24 

>03_04_0019 +
           16500877-16501029,16501184-16501240,16501560-16501668,
           16501837-16502021,16502103-16502182,16502869-16503085,
           16503394-16503633,16503720-16504028
          Length = 449

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 19/40 (47%), Positives = 28/40 (70%)
 Frame = +1

Query: 529 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGL 648
           +S+W I QH+  Y+ P  QK II +L+MVP+YA  ++I L
Sbjct: 35  VSLWLILQHLRSYSNPEEQKWIIAVLFMVPVYASESIISL 74



 Score = 34.7 bits (76), Expect = 0.10
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 657 EQSIYLDSLRECYEAYVIYNFMKYLLNYLNDGHDLXAVLE 776
           E S+  D LR CYEA+ +Y F +YL+  L     +  +LE
Sbjct: 78  EFSLACDILRNCYEAFALYAFGRYLVACLGGERQVFRLLE 117


>03_06_0530 -
           34545699-34546013,34546121-34546354,34547006-34547078,
           34548226-34548299,34548852-34549004
          Length = 282

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 15/40 (37%), Positives = 30/40 (75%)
 Frame = +1

Query: 529 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGL 648
           I++  I +H++HY +P  Q+ I+R+++MVP+YA+ + + L
Sbjct: 22  IALVHIYRHLLHYAEPIYQRFIVRLIFMVPVYAVMSFLSL 61



 Score = 36.3 bits (80), Expect = 0.033
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 651 IXEQSIYLDSLRECYEAYVIYNFMKYLLNYLNDGHDLXAVL 773
           + + SIY +S+RE Y+A+VIYNF    L ++     +  VL
Sbjct: 63  LPDNSIYFNSIREIYDAWVIYNFFSLCLAWVGGPGAVVGVL 103


>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 14/35 (40%), Positives = 25/35 (71%)
 Frame = +1

Query: 544 ITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGL 648
           ++QH+ ++  P  QK I+ I+ M P+YA+N+ +GL
Sbjct: 39  VSQHLFYWKNPKEQKAILIIVLMAPLYAINSFVGL 73



 Score = 34.7 bits (76), Expect = 0.10
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 669 YLDSLRECYEAYVIYNFMKYLLNYLN 746
           +LD+++ECYEA  I  FM  + +YLN
Sbjct: 85  FLDAVKECYEALAIAKFMALMYSYLN 110


>05_06_0083 +
           25429958-25429967,25431035-25431144,25431286-25431342,
           25431828-25431936,25432329-25432513,25432595-25432683,
           25432877-25433132,25433623-25433865,25433955-25434266
          Length = 456

 Score = 36.7 bits (81), Expect = 0.025
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +1

Query: 529 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEXLNNQF 669
           +S++ I +H+  Y +P  QK +I ++ MVP+YA+ +   L   N  F
Sbjct: 24  LSLFLIFEHLCAYHQPEEQKFLIGLILMVPVYAVQSFFSLLNSNVAF 70



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 681 LRECYEAYVIYNFMKYLLNYLNDGHDLXAVLETNLSIS 794
           +R+CYEA+ +Y F +YL+  L         +E     S
Sbjct: 75  MRDCYEAFAMYCFERYLIACLGGEESTIRFMEGRFQFS 112


>04_04_0803 -
           28165828-28166136,28166257-28166505,28166628-28166889,
           28168116-28168204,28168286-28168342,28168443-28168595
          Length = 372

 Score = 36.7 bits (81), Expect = 0.025
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 529 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGL 648
           +SI+ I +H+  Y  P  QK ++ ++ MVP YA+ + + L
Sbjct: 35  LSIYLIFEHLSAYNNPEEQKFVLGVILMVPCYAIESYVSL 74


>02_05_0259 -
           27226378-27226398,27226643-27226813,27227063-27227284,
           27227508-27227668,27227933-27227996,27228002-27228194,
           27228499-27228587,27228668-27228852,27229671-27229779,
           27229880-27229936,27230023-27230175
          Length = 474

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 529 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGL 648
           +S++ I QH+  Y  P  QK ++ ++ MVP YA+ + + L
Sbjct: 35  LSMYLIFQHLSAYNNPEEQKFVLGVILMVPCYAVESYVSL 74



 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 657 EQSIYLDSLRECYEAYVIYNFMKYL 731
           + S+Y   LR+ YEA+ +Y F +Y+
Sbjct: 78  DTSVYCGILRDAYEAFAMYCFGRYI 102


>07_01_0961 +
           8070992-8071015,8071016-8071089,8073051-8073200,
           8073307-8073592,8074077-8074220,8074357-8074665
          Length = 328

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +3

Query: 663 SIYLDSLRECYEAYVIYNFMKYLLNYL 743
           +IY +S+RE Y+A+VIYNF    L ++
Sbjct: 24  AIYFNSIREIYDAWVIYNFFSLCLAWV 50


>06_03_1475 -
           30391555-30391890,30391982-30392233,30392358-30392619,
           30393232-30393320,30393408-30393592,30393673-30393781,
           30393886-30393942,30394047-30394196
          Length = 479

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 529 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGL 648
           +S++ +  H+  Y  P  QK ++ ++ MVP YA+ + I L
Sbjct: 34  LSLFLLFNHLSAYKNPEEQKFLVGVILMVPCYAVESYISL 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,919,394
Number of Sequences: 37544
Number of extensions: 336809
Number of successful extensions: 623
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)