Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B06
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical pr...    40   0.003
Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical pr...    40   0.003
AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine re...    30   2.6  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    29   4.6  
AC103567-5|AAL35728.2|  337|Caenorhabditis elegans Hypothetical ...    29   4.6  

>Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/40 (45%), Positives = 29/40 (72%)
 Frame = +1

Query: 529 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGL 648
           I+  QI QH+  Y+ P+ Q+ I+RIL++VPIYA ++ + L
Sbjct: 31  ITSHQIYQHLRFYSCPAEQRWIVRILFIVPIYAFDSWLSL 70



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 666 IYLDSLRECYEAYVIYNFMKYLLNYLNDGHDLXA 767
           IY +S+R+CYEA+VIY+F+     YL    ++ A
Sbjct: 79  IYFNSIRDCYEAFVIYSFLSLCYEYLGGESNIMA 112


>Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/40 (45%), Positives = 29/40 (72%)
 Frame = +1

Query: 529 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGL 648
           I+  QI QH+  Y+ P+ Q+ I+RIL++VPIYA ++ + L
Sbjct: 31  ITSHQIYQHLRFYSCPAEQRWIVRILFIVPIYAFDSWLSL 70



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 666 IYLDSLRECYEAYVIYNFMKYLLNYLNDGHDLXA 767
           IY +S+R+CYEA+VIY+F+     YL    ++ A
Sbjct: 79  IYFNSIRDCYEAFVIYSFLSLCYEYLGGESNIMA 112


>AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine
           receptor, class z protein70 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 105 TLYCVVNKCTFVIILFKLYYILN*LLIFVLTIYHYRYNL 221
           TLY  +   T  +++FKL YIL   +IF+L +  +   L
Sbjct: 213 TLYTYIFWLTITVVVFKLIYILLFTIIFILFLPQFSIQL 251


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 229 NKTKTRIKITYNIAFVGLCSWCYL 300
           +K  TRI ITY I F G+ SW  L
Sbjct: 226 SKKLTRIAITYCIVFTGVLSWTVL 249


>AC103567-5|AAL35728.2|  337|Caenorhabditis elegans Hypothetical
           protein Y51F10.10 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -2

Query: 464 LFIECTINIGTSTTIRMTYRAMN--TGLIHNLH*LKNEITAFEHIIPLACDEKKINYK*H 291
           + + C +N   S T   T  +++  + ++H+LH  ++    F+ I  LA D++K   +  
Sbjct: 109 VLVPCPVNSNPSMTSSSTKPSVSNTSAMVHSLHEFESTNNVFDDIQILALDDRKALQEVL 168

Query: 290 QLHNPTN 270
            L N +N
Sbjct: 169 MLTNGSN 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,431,252
Number of Sequences: 27780
Number of extensions: 340991
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)