Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B05
         (957 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch...    84   2e-17
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    38   0.002
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    36   0.006
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    31   0.32 
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    29   0.73 
SPBC1709.09 |||mitochondrial translation termination factor|Schi...    27   3.9  

>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
           Tim10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 33/73 (45%), Positives = 53/73 (72%)
 Frame = +1

Query: 343 LDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDV 522
           ++P  + + ++ E+EMMSD++NRLV  CH+KCI  KY+E +L KGESVC+DRCV+KY + 
Sbjct: 13  INPQNIAMAEQ-EVEMMSDIFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEA 71

Query: 523 HERIGKKLSNMSQ 561
           ++ + + +    Q
Sbjct: 72  NQSLSQHMQKRGQ 84


>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 16/66 (24%), Positives = 35/66 (53%)
 Frame = +1

Query: 361 QLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGK 540
           Q+++  +++   +MY+ L   C   C+   +   +L   ES C+ +C  K+L   ER+G+
Sbjct: 14  QVLEAKQLKEYLNMYSTLTQNCFSDCVQ-DFTSSKLSNKESECIAKCADKFLKHSERVGQ 72

Query: 541 KLSNMS 558
           + +  +
Sbjct: 73  RFAEFN 78


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +1

Query: 361 QLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEP--ELGKGESVCLDRCVAKYLDVHERI 534
           Q+ QEL +    ++ +++   C  KCIP    EP       E  C+ +C+ +Y+D    +
Sbjct: 24  QIRQELAVAQAGELISKINENCFDKCIP----EPGSTFDPNEKSCVSKCMERYMDAWNIV 79

Query: 535 GKKLSNMSQGETEDL 579
            +   +  Q E ++L
Sbjct: 80  SRTYISRMQREQKNL 94


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = +1

Query: 340 QLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLD 519
           QL+ +K    ++ ++++   ++ +  S C  KCI    ++  L K E  CL  CV ++LD
Sbjct: 17  QLELSKFIESEQQKVKLQQAIH-QFTSTCWPKCIGNIGNK--LDKSEEQCLQNCVERFLD 73

Query: 520 VHERIGKK 543
            +  I K+
Sbjct: 74  CNFHIIKR 81


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 18/79 (22%), Positives = 36/79 (45%)
 Frame = +1

Query: 334 VPQLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKY 513
           +P ++  ++ ++  ++   +SDM    V A     IP++Y +P L  G+  C    +  Y
Sbjct: 78  LPTINMGRMTMLDAIKSNYISDMSKADVDAVFDSIIPLRYQQPTLLLGK--CSGLTITAY 135

Query: 514 LDVHERIGKKLSNMSQGET 570
              H   G   S + + E+
Sbjct: 136 NAGHTLGGTLWSLIKESES 154


>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
 Frame = +1

Query: 454 HEPELGKGESVCLDRCVAKYLDVHERIGKKLSNM----SQGETEDLTKVNIPDKK*YAAT 621
           H+PE     +  L    AK   VHE++ K+        SQG    L  + IP K   A T
Sbjct: 47  HDPEFANSFNKMLKSFEAKMQLVHEKLAKRFQEAVVLPSQGNFTQLEALFIPSKSIKAPT 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,449
Number of Sequences: 5004
Number of extensions: 48586
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)