Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B05
         (957 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0836 + 23550376-23550470,23551617-23551803                       48   1e-05
08_02_1396 - 26742694-26742915,26743736-26743771                       42   0.001
05_01_0085 - 568015-568204,568286-568365                               31   1.0  
07_01_0952 - 8005633-8005687,8006357-8006395,8006668-8006720,800...    29   5.5  
07_01_0422 + 3220988-3221536                                           29   7.2  

>12_02_0836 + 23550376-23550470,23551617-23551803
          Length = 93

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +1

Query: 334 VPQLDPAKLQ-LVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAK 510
           +P+ D  ++  +V +L+I     MYN LV  C   C+   +    L K E  C+ RC  K
Sbjct: 12  LPEEDKMRMAAMVDQLQIRDSLRMYNSLVERCFTDCVDT-FRRKTLDKQEESCVRRCAEK 70

Query: 511 YLDVHERIGKKLSNMSQG 564
           +L    R+G + + ++QG
Sbjct: 71  FLKHSMRVGMRFAELNQG 88


>08_02_1396 - 26742694-26742915,26743736-26743771
          Length = 85

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = +1

Query: 358 LQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIG 537
           + L QE +  M+S+M  +L S C  KCI       +   GE+ CL  C  ++LD+   I 
Sbjct: 21  ITLQQEQQKAMVSEMVGKLTSVCWDKCI-TSTPGSKFSSGETTCLTNCAQRFLDMSVIIA 79

Query: 538 KK 543
           K+
Sbjct: 80  KR 81


>05_01_0085 - 568015-568204,568286-568365
          Length = 89

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 346 DPAKLQLVQE-LEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYL 516
           D A+++ V + L+      +YN +   C   C+   Y    LGK E  C+  CV K+L
Sbjct: 11  DKARMEAVADKLQTRDAIRLYNWVSHRCFSDCVTTFYRRT-LGKKEEDCVRSCVRKFL 67


>07_01_0952 -
           8005633-8005687,8006357-8006395,8006668-8006720,
           8007868-8007930
          Length = 69

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 322 VKMAVPQLDPAKLQL--VQELEIEMMSDMYNRLVSACHRKCI 441
           V +   Q++  K Q+  + E E+E   D++NRL   C  KCI
Sbjct: 8   VNVQKEQVNMQKEQMFGLAEKEMEYRVDLFNRLTQTCFSKCI 49


>07_01_0422 + 3220988-3221536
          Length = 182

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 439 CTSGDMRSPNGC-TCRTSS-QSPVPAPIAALQGLAAVLPS 326
           C    +R    C  CRTS   SP+P P+A +  LA V PS
Sbjct: 143 CVDPWLRQRPTCPVCRTSPLPSPMPTPLAEVTPLALVRPS 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,356,547
Number of Sequences: 37544
Number of extensions: 296372
Number of successful extensions: 683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)