Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B05
         (957 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-17|CAC70139.1|   86|Caenorhabditis elegans Hypothetical...   108   5e-24
AF150094-1|AAD40000.1|   86|Caenorhabditis elegans small zinc fi...   108   5e-24
Z96047-1|CAB09410.1|  108|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF144704-1|AAD39955.1|  108|Caenorhabditis elegans small zinc fi...    29   3.7  
AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AL161712-17|CAC70139.1|   86|Caenorhabditis elegans Hypothetical
           protein Y66D12A.22 protein.
          Length = 86

 Score =  108 bits (260), Expect = 5e-24
 Identities = 47/79 (59%), Positives = 62/79 (78%)
 Frame = +1

Query: 352 AKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHER 531
           A++  V ELE+EMMSDMY R+ ++C  KCI   + E EL KGE+VCLDRCVAKYLDVHE+
Sbjct: 5   AQMAQVAELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEK 64

Query: 532 IGKKLSNMSQGETEDLTKV 588
           +GK+L++MSQG+   L K+
Sbjct: 65  LGKRLTSMSQGDEAALQKI 83


>AF150094-1|AAD40000.1|   86|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 86

 Score =  108 bits (260), Expect = 5e-24
 Identities = 47/79 (59%), Positives = 62/79 (78%)
 Frame = +1

Query: 352 AKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHER 531
           A++  V ELE+EMMSDMY R+ ++C  KCI   + E EL KGE+VCLDRCVAKYLDVHE+
Sbjct: 5   AQMAQVAELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEK 64

Query: 532 IGKKLSNMSQGETEDLTKV 588
           +GK+L++MSQG+   L K+
Sbjct: 65  LGKRLTSMSQGDEAALQKI 83


>Z96047-1|CAB09410.1|  108|Caenorhabditis elegans Hypothetical
           protein DY3.1 protein.
          Length = 108

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/81 (20%), Positives = 33/81 (40%)
 Frame = +1

Query: 325 KMAVPQLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCV 504
           K++  Q +     + Q+  +    ++   +   C  KCI        L  GE  CL RC+
Sbjct: 12  KLSPEQQEQVISGVKQQAALANAQNLVTDISEKCTNKCITAP--GSSLASGEKQCLQRCM 69

Query: 505 AKYLDVHERIGKKLSNMSQGE 567
            ++++    + + L    Q E
Sbjct: 70  DRFMESWNLVSQTLQKRLQEE 90


>AF144704-1|AAD39955.1|  108|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 108

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/81 (20%), Positives = 33/81 (40%)
 Frame = +1

Query: 325 KMAVPQLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCV 504
           K++  Q +     + Q+  +    ++   +   C  KCI        L  GE  CL RC+
Sbjct: 12  KLSPEQQEQVISGVKQQAALANAQNLVTDISEKCTNKCITAP--GSSLASGEKQCLQRCM 69

Query: 505 AKYLDVHERIGKKLSNMSQGE 567
            ++++    + + L    Q E
Sbjct: 70  DRFMESWNLVSQTLQKRLQEE 90


>AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical
           protein F37C4.3 protein.
          Length = 685

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 346 DPAKL--QLVQELEIEMMSDMYNRLVSACHRKCIPIKY 453
           DP  L  QLV   E EM    Y +L   C+ KC+ + Y
Sbjct: 600 DPVILDKQLVDFSEYEMARKRYAQLFQDCNEKCVRVDY 637


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,601,446
Number of Sequences: 27780
Number of extensions: 274578
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)