Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_B04
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 34 0.024
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 30 0.39
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 30 0.39
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 1.2
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 28 2.1
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 27 2.8
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 2.8
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 3.6
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 6.4
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 26 6.4
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 8.4
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 8.4
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 34.3 bits (75), Expect = 0.024
Identities = 24/90 (26%), Positives = 46/90 (51%)
Frame = +2
Query: 359 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 538
++ K + ++ +G+ S V+ +E + V T + + Y LTD S+E ENK L
Sbjct: 3443 LRNKCEPIISSFGFPISKSAVRTNIE-RCVQTSIESKYYKNLTDYSLENIYIIQENKSPL 3501
Query: 539 LVINKLLEPINVADSHWKQKTDKVVIFLGK 628
L+I+ + +++ S +K K ++ F K
Sbjct: 3502 LIIDPSSQILDILPSLYKGKASDLISFSNK 3531
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.39
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 702 LKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQRKK 839
LK AE +KDP I+ L N++ G K W +Q +K
Sbjct: 248 LKEAEEFQKDPASKILLLFYNIFGVGASHAAEWYQKGWRTIEQVRK 293
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/66 (25%), Positives = 37/66 (56%)
Frame = +3
Query: 624 AKSNPNTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMI 803
AK + +++ S T+ + K D +L E D+ + ++ +L +N+Y+ DD+ +R +
Sbjct: 284 AKDSNHSSASGNTKNKAKDWDSLA-KLADLEEDEPTGEAALANLFQNLYKNADDDTRRAM 342
Query: 804 SKAWYE 821
K++ E
Sbjct: 343 MKSYTE 348
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 639 NTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQ 737
NT W M +E++ + R + LKP D+K+ +
Sbjct: 350 NTIWREMMAMERRTQAARLSGLKPVAADEKESE 382
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +3
Query: 633 NPNTTWSHMTEIE---KKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMI 803
N NT + + ++ F + N P+E D++ + L++ Y+ G+D +++I
Sbjct: 268 NKNTKQTRVVKVSVPRDSFFNFFNPPTPPSEEDEESESPELDELLELDYQIGEDFKEKLI 327
Query: 804 SKA--WYEGQ 827
+A W+ G+
Sbjct: 328 PRAVEWFTGE 337
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 527 KDYLLVINKLLEPINVADSHWKQ 595
++YLL+ + P +V +SHWK+
Sbjct: 530 QEYLLIDRDVFGPFSVRESHWKK 552
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +3
Query: 570 MWQTVIGNKKQIR*SYSLAKSNPNTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQDSIM 749
+W +K + A S T+ +K +++ N+ K A D KDP D
Sbjct: 59 VWYYYFDVEKSVNYLLQKASSKAGAKEKQNTDSQK---EKKQNKSKEALADAKDPLDESS 115
Query: 750 SLMKNMYETGDDE 788
+ +KN+ +DE
Sbjct: 116 NGIKNLSLNKNDE 128
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 639 NTTWSHMTEIEKKFEDQR-NNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAW 815
NT + + +K E Q N R AE D+K P D+I +L + + ++ +
Sbjct: 83 NTEYIVASGGRRKIEPQDINERPAKAENDEKVPSDAIEALETQLTQQKSEKHNSSVINFI 142
Query: 816 YEGQQR 833
YE +R
Sbjct: 143 YEKNER 148
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 241 GFTLLGDQKT*DRTNNIKRKGNFDANGSITNTHNKYISSSAKEVSSQIEC 390
GF +GD+ D NNI +N + H+K S K + +I+C
Sbjct: 112 GFLTVGDEFYKDGVNNISSLLTSSSNQRFNDNHHK---SIVKRIRHEIKC 158
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 844 ISFLRCCPSYQALEIILFISSSPVSYIFFMRLIM 743
I +L CCP IL+ +SP ++ F ++
Sbjct: 358 ILYLFCCPDLDTFTAILYNDNSPQPFVNFYSYLL 391
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 8.4
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +2
Query: 359 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 538
+QK Y+ WD+SDK V ++E N L K K T S L L D
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVVCWIEEHN-DDLSKRTQELKSTYYSERL--SKLLRSDRK 2251
Query: 539 LVINKLLEPINVADSHWKQK 598
+I+ L + + D + K++
Sbjct: 2252 GMIDSLAQVLTELDENEKKE 2271
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 605 YLFFVSNDCLPHL 567
++FFV ND LPHL
Sbjct: 329 FIFFVGNDFLPHL 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,486,257
Number of Sequences: 5004
Number of extensions: 73897
Number of successful extensions: 266
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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