Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_B04
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0764 - 31804811-31804915,31805013-31805072,31805720-318059... 60 3e-09
08_02_0318 + 15710834-15711775 30 2.2
07_03_0674 + 20598668-20598774,20599456-20600467 30 2.2
12_01_0610 + 5030130-5030247,5030957-5033193 29 5.1
11_06_0657 + 25938382-25938443,25938511-25938718,25939222-259392... 29 5.1
08_02_0822 + 21549257-21550729,21550776-21550877 29 5.1
01_05_0096 + 18073573-18073839,18073890-18074294 29 6.7
01_01_0887 + 6978869-6979053,6979183-6979558,6979651-6979734,697... 29 6.7
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 28 8.8
06_01_0888 + 6805071-6805485,6806202-6806374,6806501-6806549,680... 28 8.8
>01_06_0764 -
31804811-31804915,31805013-31805072,31805720-31805959,
31807367-31807525,31807653-31807769
Length = 226
Score = 59.7 bits (138), Expect = 3e-09
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +3
Query: 690 RNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQRK 836
+ ++ KP+ +KDP IM LMKNMYE GD++MKR I+KAW + + K
Sbjct: 169 KEDKFKPSMAKEKDPMSGIMDLMKNMYEEGDEDMKRTIAKAWSDARSGK 217
Score = 41.5 bits (93), Expect = 9e-04
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 5/162 (3%)
Frame = +2
Query: 176 EIRSDIEEFNDLLKQAKRKKVQDLLSLEIRXXXXXXXXXXXXXXXXPMEV-SPIPTTSTS 352
E+R D+EE L AKR +V L+ EIR + SP + +
Sbjct: 5 ELRLDLEELRRLEGLAKRPRVLSALANEIRAVDAKLAKATEPQAPQAVAAGSPPVVAAAA 64
Query: 353 APVQKK----YQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNL 520
AP V L + WDQ + +K++V L+ V +++V S++ ++
Sbjct: 65 APAPAAAAGVSYVTLGSFSWDQDAEKIKIYVFLEGVE---QDKVETTFKPMSVDTKFHDV 121
Query: 521 ENKDYLLVINKLLEPINVADSHWKQKTDKVVIFLGKI*SKHN 646
+ K+Y I KL + I K K+++ L K SK N
Sbjct: 122 KGKNYRCAIPKLHKEIVPEKCKVLVKPTKIIVTLYKA-SKGN 162
>08_02_0318 + 15710834-15711775
Length = 313
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = -1
Query: 347 YLLWVLVILPLASKFPFLLMLLVLSQVF*SPRRVNPVLSYV 225
Y L LV++PL P ++ L LS V+ +PRR +PV +++
Sbjct: 228 YALAALVVVPL----PVQVVALALSSVWETPRRTSPVAAFL 264
>07_03_0674 + 20598668-20598774,20599456-20600467
Length = 372
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 314 PMEVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFV-ELKNVHTLPKEQVYCKLTD 490
P +VSP P P++K + K ++Y FVK + ++ N H E ++ +L+
Sbjct: 220 PPQVSPTPAIDVLLPIEKAQKAKRDIYA---VSYFVKAGLGKVLNPHKERMENLFKRLSP 276
Query: 491 KSMELHV 511
+ EL+V
Sbjct: 277 WAPELYV 283
>12_01_0610 + 5030130-5030247,5030957-5033193
Length = 784
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +3
Query: 618 SLAKSNPNTTWSH----MTEIEKKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDD 785
SL K NP++ MTE+ ++ +++L P KK + + ++ Y D
Sbjct: 400 SLLKPNPSSRSEDVGIDMTEVSD--DEDESDQLPPFRVLKKSEYEKLSKEQRSAYLDELD 457
Query: 786 EMKRM-ISKAWYEGQQRKKLI 845
+ + + K W EG +R+KL+
Sbjct: 458 YRETLYLKKQWKEGIRRQKLV 478
>11_06_0657 +
25938382-25938443,25938511-25938718,25939222-25939268,
25939473-25939805,25940529-25940613,25940689-25940884,
25941012-25941182,25941261-25941318,25941429-25941657,
25942296-25943183
Length = 758
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +3
Query: 702 LKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQRKKLI*WIYKLN 866
+ PA D D ++ GD R AW +GQ+ K ++ +Y ++
Sbjct: 458 ISPASETPCDETDKLLFAAATKITVGDGNTARFWDSAWLDGQRPKGIMPLVYAIS 512
>08_02_0822 + 21549257-21550729,21550776-21550877
Length = 524
Score = 29.1 bits (62), Expect = 5.1
Identities = 10/41 (24%), Positives = 28/41 (68%)
Frame = +2
Query: 485 TDKSMELHVDNLENKDYLLVINKLLEPINVADSHWKQKTDK 607
++K +E++ D +NK+ ++++ ++ E +N+ +SH + T +
Sbjct: 438 SEKMVEMN-DTRKNKEQIIMLKEVYEQLNMIESHMRPSTSQ 477
>01_05_0096 + 18073573-18073839,18073890-18074294
Length = 223
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 624 AKSNPNTTWSHMTEIEKKFE-DQRNNRLKPAETDKK-DPQDSIMS-LMKNMYETGDDEMK 794
+K+N + T KK + D+ +K E +++ D +++ + MY GD++M+
Sbjct: 124 SKANNKLAATATTTTRKKVDWDKLEAEVKKEEEEEEVDTATPVVNRFFQQMYGNGDEDMR 183
Query: 795 RMISKAWYE 821
R I K++ E
Sbjct: 184 RAIMKSYVE 192
>01_01_0887 +
6978869-6979053,6979183-6979558,6979651-6979734,
6979838-6979903,6980938-6981007,6981333-6981718,
6982114-6982154,6982661-6982757
Length = 434
Score = 28.7 bits (61), Expect = 6.7
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Frame = +3
Query: 603 IR*SYSLAKSNPNTTW-----SHMTEIEKKFE------DQRNNRLKPAETDKKDPQDSIM 749
IR + L KS N W H+ E+ +K DQ + + + K Q +
Sbjct: 158 IRLAQKLQKSKRNKRWRKRKRKHVAELFQKEHADYDRIDQEADEWRARQIAKDMAQRKVE 217
Query: 750 SLMKNMYETGDDEMKRMISKAWYEGQQRKKLI 845
++ + + ++E KR+ S+AW G +R K I
Sbjct: 218 NMKQIAKKKANEERKRLESEAWIIGFERLKSI 249
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 663 EIEKKFEDQRNNRLKPAETDKKDPQDS 743
E+E++ E R R+K E D+K P DS
Sbjct: 361 ELERERERLRERRMKERERDRKHPADS 387
>06_01_0888 +
6805071-6805485,6806202-6806374,6806501-6806549,
6806654-6806820,6806919-6807002,6807097-6807135
Length = 308
Score = 28.3 bits (60), Expect = 8.8
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Frame = +3
Query: 504 CMWTIWKIKITCLLLTSYWNL*MWQTVIGNKKQI------R*SYSLAKSNPNTTWSHMTE 665
C W+I K +LLT + W++V+ ++ + LA +P T +
Sbjct: 208 CFWSIEDGKSLSILLTKQNQMEWWKSVVKGDPEVDTQKVEPENSKLADLDPETRQT---- 263
Query: 666 IEKKFEDQRNNRLKPAETDKKDPQDSIMSLM 758
+EK DQR ++ +D+ QD + M
Sbjct: 264 VEKMMFDQRQKQMGLPTSDEMQKQDMLKKFM 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,104,074
Number of Sequences: 37544
Number of extensions: 388493
Number of successful extensions: 1029
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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