Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B04
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical p...    35   0.069
Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    29   3.4  
AC025723-7|AAN84833.1|  619|Caenorhabditis elegans C.elegans hom...    29   3.4  
AC025723-6|AAN84834.1|  621|Caenorhabditis elegans C.elegans hom...    29   3.4  
AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical ...    29   3.4  
AL033514-32|CAA22112.1|  344|Caenorhabditis elegans Hypothetical...    29   6.0  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U41037-1|AAA82387.1|  629|Caenorhabditis elegans Gtpase activati...    28   7.9  
AF118123-1|AAD13781.1|  629|Caenorhabditis elegans GTPase activa...    28   7.9  

>Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical
           protein ZK1098.3 protein.
          Length = 784

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +2

Query: 338 TTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCK---LTDKSMELH 508
           T+S   P  K+  +K  +   D   K  K  V+ K+  ++ +EQ+Y K     D+ ++  
Sbjct: 5   TSSEDVPENKQKSLKFEII--DARMKIFKDIVKSKSSESVKEEQIYQKSLEFFDEDLKSS 62

Query: 509 VDNLENKDYLLVINKLLEPINVAD 580
            +++ N++      K LEP+NV D
Sbjct: 63  EESVSNEEIKTGSEKELEPLNVFD 86


>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 320 EVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSM 499
           ++  +P       V K    +L  YGWDQ  +    FV      TL  +  YC L D   
Sbjct: 21  DLPQLPDEIIEIIVSKVLPTELVAYGWDQVSRSFGTFVH----RTLCSKVYYCALHDPVW 76

Query: 500 ELH 508
           EL+
Sbjct: 77  ELY 79


>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform a protein.
          Length = 1273

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +3

Query: 657 MTEIEKKFEDQRNNRLKP--AETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQ 830
           + E+EKK E + N+RL    AE +K   Q+ I+    +  E+ + +++R +  A    +Q
Sbjct: 168 VNEVEKKAEQELNDRLTELIAEKEKMKEQNEILEKNMDSLESKNKDIQRKLEIAKQTVEQ 227

Query: 831 RKKL 842
           +  L
Sbjct: 228 KDGL 231


>AC025723-7|AAN84833.1|  619|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform b protein.
          Length = 619

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +3

Query: 657 MTEIEKKFEDQRNNRLKP--AETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQ 830
           + E+EKK E + N+RL    AE +K   Q+ I+    +  E+ + +++R +  A    +Q
Sbjct: 168 VNEVEKKAEQELNDRLTELIAEKEKMKEQNEILEKNMDSLESKNKDIQRKLEIAKQTVEQ 227

Query: 831 RKKL 842
           +  L
Sbjct: 228 KDGL 231


>AC025723-6|AAN84834.1|  621|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform c protein.
          Length = 621

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +3

Query: 657 MTEIEKKFEDQRNNRLKP--AETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQ 830
           + E+EKK E + N+RL    AE +K   Q+ I+    +  E+ + +++R +  A    +Q
Sbjct: 168 VNEVEKKAEQELNDRLTELIAEKEKMKEQNEILEKNMDSLESKNKDIQRKLEIAKQTVEQ 227

Query: 831 RKKL 842
           +  L
Sbjct: 228 KDGL 231


>AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical
           protein Y39H10A.6 protein.
          Length = 684

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 232 ESTGFTLLGDQKT*DRTNNIKRKGNFDANGSITNTHNKYIS-SSAKEVSSQIECIWL 399
           E TGFT+        R N +K  GN+DA   I  T N +I+  +AK  S  ++C  L
Sbjct: 79  EETGFTIETTSGARVRANILK--GNYDAAIQILETSNDHITEETAKHGSYIVKCFKL 133


>AL033514-32|CAA22112.1|  344|Caenorhabditis elegans Hypothetical
           protein Y75B8A.34 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
 Frame = -2

Query: 802 IILFISSSPVSYIFFMRLIMESCGSFLSVS---AGFKRL-----LRWSSNFFSISV 659
           IILFI SS +S   F+ +I     +F+  S   +GF  +     L +SSNFFS+++
Sbjct: 82  IILFIHSSIISLRVFVYIISSLASAFIIDSRTLSGFYFIQPSLYLDYSSNFFSVAI 137


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +3

Query: 663 EIEKKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQRKK 839
           E+EKK ED++ +     E +KK+ +       K   E  D+E K+   K   E +++K+
Sbjct: 302 EVEKKEEDEKKDEEPKKEEEKKEEEQKEEVEKKEEEEKKDEEPKKEEEKK--EEEEKKE 358



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 663 EIEKKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMKRMISKAWYEGQQRKK 839
           E EKK E+Q+    K  E +KKD +       K   E  +DE++    K   +  + KK
Sbjct: 319 EEEKKEEEQKEEVEKKEEEEKKDEEPKKEEEKKEEEEKKEDEVEEKSEKVEEKELEPKK 377


>U41037-1|AAA82387.1|  629|Caenorhabditis elegans Gtpase activating
           protein familyprotein 1 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 374 QVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYC--KLTDKSMELHVDNLENKDYLLVI 547
           QV  +   W +   + K +V+L N H + ++ V C  K T    ++   N++NK+ + ++
Sbjct: 420 QVDRSRLAWKKVLHYKKRYVQLTNTHLIWQKDVQCAPKGTVPLSDIKFVNVDNKNIITIV 479

Query: 548 NKLLE 562
            + ++
Sbjct: 480 CETMQ 484


>AF118123-1|AAD13781.1|  629|Caenorhabditis elegans GTPase
           activating protein GAP-1 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 374 QVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYC--KLTDKSMELHVDNLENKDYLLVI 547
           QV  +   W +   + K +V+L N H + ++ V C  K T    ++   N++NK+ + ++
Sbjct: 420 QVDRSRLAWKKVLHYKKRYVQLTNTHLIWQKDVQCAPKGTVPLSDIKFVNVDNKNIITIV 479

Query: 548 NKLLE 562
            + ++
Sbjct: 480 CETMQ 484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,815,062
Number of Sequences: 27780
Number of extensions: 398987
Number of successful extensions: 1433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)