Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B03
         (1008 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma j...    38   0.41 
UniRef50_Q5C113 Cluster: SJCHGC03128 protein; n=4; Eukaryota|Rep...    36   1.2  
UniRef50_Q54H12 Cluster: Actin-binding protein; n=2; Dictyosteli...    36   1.2  
UniRef50_A4TTL3 Cluster: Putative uncharacterized protein; n=2; ...    36   2.2  
UniRef50_Q4RSI9 Cluster: Chromosome 13 SCAF15000, whole genome s...    34   6.7  
UniRef50_Q01HL2 Cluster: H0211F06-OSIGBa0153M17.6 protein; n=12;...    34   6.7  
UniRef50_A5JUU8 Cluster: Formin B; n=2; Trypanosoma brucei|Rep: ...    34   6.7  

>UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC03138 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 156

 Score = 37.9 bits (84), Expect = 0.41
 Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = +3

Query: 357 PFXRGFFSXKKNFXXXGGGFFXXXXPPP-----XXKKXXPPPPXGG 479
           PF  GFF  +  F   GG  F    PPP       KK  PPPP GG
Sbjct: 9   PFWGGFFFFRGVFPPRGGPLFFYGAPPPPPPFFFNKKKRPPPPPGG 54



 Score = 37.5 bits (83), Expect = 0.54
 Identities = 28/67 (41%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +1

Query: 316 PXPXFFXEKKXPPXLXKGGFFPXKKIXXXXGGVF--FXSXXPPPXXKKXPP----PPXGG 477
           P P FF +KK PP    GG  P        GG F  F    PPP     PP    PP GG
Sbjct: 37  PPPFFFNKKKRPPP-PPGGPPP-----PFGGGGFPPFFHFFPPPGGGVAPPQGGGPPLGG 90

Query: 478 GXFXXFF 498
           G F  FF
Sbjct: 91  GGFQFFF 97



 Score = 35.9 bits (79), Expect = 1.6
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +1

Query: 415 FFXSXXPPPXXKKXPPPPXGGGXFXXFFXXXXXXXXXXXXXXGGG 549
           FF     PP     PPPP GGG F  FF              GGG
Sbjct: 41  FFNKKKRPPPPPGGPPPPFGGGGFPPFFHFFPPPGGGVAPPQGGG 85


>UniRef50_Q5C113 Cluster: SJCHGC03128 protein; n=4; Eukaryota|Rep:
           SJCHGC03128 protein - Schistosoma japonicum (Blood
           fluke)
          Length = 145

 Score = 36.3 bits (80), Expect = 1.2
 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
 Frame = -3

Query: 547 PPPXXXXGGXXXXXXXXKKXKXNPPXGGGGXXF-----XLXGGGXXXKKKPPPXXXKFFF 383
           PPP     G         K    PP GGGG  F        GGG   KK+ PP   K   
Sbjct: 80  PPPGGGKKGKNGGKPPPPKGGGGPPGGGGGLSFFKKKKGRGGGGAQKKKRGPPPGGKTPP 139

Query: 382 XEKNP 368
            +KNP
Sbjct: 140 KKKNP 144


>UniRef50_Q54H12 Cluster: Actin-binding protein; n=2; Dictyostelium
           discoideum|Rep: Actin-binding protein - Dictyostelium
           discoideum AX4
          Length = 1220

 Score = 36.3 bits (80), Expect = 1.2
 Identities = 32/95 (33%), Positives = 34/95 (35%)
 Frame = +1

Query: 211 PXKIXFXXGISQTPPPLPKNFWAPXPXGGFKKXFFPXPXFFXEKKXPPXLXKGGFFPXKK 390
           P +I     I  TPPP P     P   GG      P P        PP +  GG  P   
Sbjct: 564 PTQIIKEEPIVTTPPPAPPAPPPPPMMGG-----GPPP-----PPPPPMMGGGGPPPPPP 613

Query: 391 IXXXXGGVFFXSXXPPPXXKKXPPPPXGGGXFXXF 495
                GG       PP   K  PPPP GGG F  F
Sbjct: 614 PPMMGGG---PPPPPPMGGKGGPPPPPGGGGFGLF 645


>UniRef50_A4TTL3 Cluster: Putative uncharacterized protein; n=2;
           cellular organisms|Rep: Putative uncharacterized protein
           - Magnetospirillum gryphiswaldense
          Length = 374

 Score = 35.5 bits (78), Expect = 2.2
 Identities = 43/139 (30%), Positives = 48/139 (34%), Gaps = 9/139 (6%)
 Frame = +1

Query: 277 APXPXGGFKKXFFPXPXFFXEKKXPPXLXKGGFFPXKKIXXXXGGVFFXSXXPPPXXKKX 456
           AP P    ++ FF  P FF     PP    GG F  KK     GG       PPP  +K 
Sbjct: 45  APPPPPARRQKFFFFPHFFFPP--PPRRGGGGVFFYKK---KRGG-----PPPPPTTQKK 94

Query: 457 -------PPPPXGGGXFXXFFXXXXXXXXXXXXXX--GGGXXXXFFFXKKKKKKXXPXXX 609
                  PPPP   G F                    GG     FF+  K+ KK  P   
Sbjct: 95  KNFFFSPPPPPSFWGXFFGGGGGFVXXPPRGGAPPPPGGAPPPLFFWGGKRGKKTPPPTH 154

Query: 610 XXXXXXXXXXKXXPPPPPP 666
                     K    PPPP
Sbjct: 155 KKGGGPPPREKKKKHPPPP 173


>UniRef50_Q4RSI9 Cluster: Chromosome 13 SCAF15000, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 13 SCAF15000, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 307

 Score = 33.9 bits (74), Expect = 6.7
 Identities = 24/78 (30%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
 Frame = +1

Query: 250 PPPLPKNFWAPXPXGGFKKXFFPXPXFFXEKKXPPXLXKGGFFPXKKIXXXXGGVFFXSX 429
           PPP P  F  P P       F P P F      PP L    +F    +       F    
Sbjct: 193 PPPPPPPFSPPPPPSPPPSLFSPPPFFSPPPSFPP-LPPPPYFSPLPLPPFFLLPFLFPP 251

Query: 430 XP---PPXXKKXPPPPXG 474
            P   PP     PPPP G
Sbjct: 252 PPFFFPPKPNPPPPPPPG 269


>UniRef50_Q01HL2 Cluster: H0211F06-OSIGBa0153M17.6 protein; n=12;
            Magnoliophyta|Rep: H0211F06-OSIGBa0153M17.6 protein -
            Oryza sativa (Rice)
          Length = 1510

 Score = 33.9 bits (74), Expect = 6.7
 Identities = 27/85 (31%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
 Frame = +1

Query: 253  PPLPKNFWA---PXPXGGFKKXFFPXPXFFXEKKXPPXLXKGGFFPXKKIXXXXGGVFFX 423
            PPLP+       P P GG      P P        PP    GG  P        GGV   
Sbjct: 1139 PPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGP 1198

Query: 424  SXXP-------PPXXKKXPPPPXGG 477
               P       PP     PPPP GG
Sbjct: 1199 PTPPGAPTPPMPPGVPGGPPPPPGG 1223


>UniRef50_A5JUU8 Cluster: Formin B; n=2; Trypanosoma brucei|Rep:
           Formin B - Trypanosoma brucei TREU927
          Length = 1004

 Score = 33.9 bits (74), Expect = 6.7
 Identities = 23/80 (28%), Positives = 23/80 (28%)
 Frame = +2

Query: 431 PPPPXXKXXPPPPXGGVXFXFFXXXXXXXXPPXXXXXGGGXXXXXXXXXXXXXXXXPXXX 610
           PPPP  K  PPPP  G              PP      GG                P   
Sbjct: 480 PPPPPVKLPPPPPPPG-----------GKLPPPPPPPPGGKLPPPPPPPGKAPPPPPGGK 528

Query: 611 XXXXXXXXXKKXXPPPPPPP 670
                    K   PPPPPPP
Sbjct: 529 LPPPPPPGGKGAPPPPPPPP 548


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,643,383
Number of Sequences: 1657284
Number of extensions: 11514089
Number of successful extensions: 154575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72042
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 95530810518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)