Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B03
         (1008 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    34   0.21 
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184     30   2.5  
12_02_0299 - 17051570-17052474,17053542-17053755                       30   3.4  
10_01_0026 - 351737-353443                                             29   4.4  
11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374...    29   7.8  
07_03_0600 + 19866757-19867218,19867920-19868429                       29   7.8  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 33.9 bits (74), Expect = 0.21
 Identities = 27/85 (31%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
 Frame = +1

Query: 253  PPLPKNFWA---PXPXGGFKKXFFPXPXFFXEKKXPPXLXKGGFFPXKKIXXXXGGVFFX 423
            PPLP+       P P GG      P P        PP    GG  P        GGV   
Sbjct: 1139 PPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGP 1198

Query: 424  SXXP-------PPXXKKXPPPPXGG 477
               P       PP     PPPP GG
Sbjct: 1199 PTPPGAPAPPMPPGVPGGPPPPPGG 1223


>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
          Length = 544

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
 Frame = +1

Query: 184 PKTGPREXFPXKIXFXXGISQTPPPLPKNFWAPXP-----XGGFKKXFFPXPXFFXEKKX 348
           P   P   FP  +      +   PP   N WAP P       G +  F P P  +     
Sbjct: 240 PAADPMRAFPASLTEAASSAPAFPPRRPNSWAPSPAPWPYTPGQQAKFSPPPALYASPTP 299

Query: 349 PPXLXKGGF 375
            P    GG+
Sbjct: 300 SPPTFAGGY 308


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 31/103 (30%), Positives = 34/103 (33%), Gaps = 9/103 (8%)
 Frame = +1

Query: 184 PKTGPREXFPXK-IXFXXGISQTPP----PLPKNFWAPXPXGGFKKXFFPXPXFFXEKKX 348
           P   P   FP   I F    S  PP    PLP   WAP P   F       P  F     
Sbjct: 234 PPPPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHL----PPIFSPPSP 289

Query: 349 PPXLXKGGFFPXKKIXXXXG----GVFFXSXXPPPXXKKXPPP 465
           PP       FP  ++           F+ S  PPP     PPP
Sbjct: 290 PPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPP 332


>10_01_0026 - 351737-353443
          Length = 568

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 421 KKKPPPXXXKFFFXEKNPLXKGXGGVFSLXKXXGGEKXFF*TPP 290
           KK+PPP    FF  EK  +    GG+  + +  G        PP
Sbjct: 132 KKRPPPPNMPFFTDEKGNVYYATGGLPPMWQQHGSSNYSIPPPP 175


>11_06_0188 +
           21036465-21036627,21036735-21036883,21037369-21037484,
           21037939-21038101
          Length = 196

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 477 PPXGGGGXFFXXGGGG 430
           PP GGGG  F  GGGG
Sbjct: 3   PPRGGGGGRFGGGGGG 18


>07_03_0600 + 19866757-19867218,19867920-19868429
          Length = 323

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 19/77 (24%), Positives = 27/77 (35%)
 Frame = +1

Query: 235 GISQTPPPLPKNFWAPXPXGGFKKXFFPXPXFFXEKKXPPXLXKGGFFPXKKIXXXXGGV 414
           G    PPP   +   P P G +++   P P    ++  PP   + G  P           
Sbjct: 12  GHHAAPPPPQVSGAPPPPHGHYQQQPPPQPYCQQQQPLPPHYYQAG--PPHAPPPQQPPA 69

Query: 415 FFXSXXPPPXXKKXPPP 465
            +    PPP     PPP
Sbjct: 70  MWGQPPPPPPQYAPPPP 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,767,938
Number of Sequences: 37544
Number of extensions: 581272
Number of successful extensions: 18725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8623
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2963829220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)