Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B03
         (1008 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    30   3.0  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    30   3.0  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   6.9  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   6.9  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   6.9  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   6.9  

>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 25/81 (30%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
 Frame = +1

Query: 253 PPLPKNFWAPXPXG----GFKKXFFPXPXFFXEKKXPPXLXKGGFFPXKKIXXXXGGVFF 420
           PP P+  + P P      G    F P P  F     PP     GF P        GG + 
Sbjct: 297 PPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFG--MGPPR----GFMPPPHPMMFRGGPYP 350

Query: 421 XSXXPPPXXKKXP-PPPXGGG 480
               PPP     P  PP  GG
Sbjct: 351 PFFPPPPPHFMRPSSPPTDGG 371


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 25/81 (30%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
 Frame = +1

Query: 253 PPLPKNFWAPXPXG----GFKKXFFPXPXFFXEKKXPPXLXKGGFFPXKKIXXXXGGVFF 420
           PP P+  + P P      G    F P P  F     PP     GF P        GG + 
Sbjct: 297 PPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFG--MGPPR----GFMPPPHPMMFRGGPYP 350

Query: 421 XSXXPPPXXKKXP-PPPXGGG 480
               PPP     P  PP  GG
Sbjct: 351 PFFPPPPPHFMRPSSPPTDGG 371


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 24/77 (31%), Positives = 25/77 (32%)
 Frame = +1

Query: 250 PPPLPKNFWAPXPXGGFKKXFFPXPXFFXEKKXPPXLXKGGFFPXKKIXXXXGGVFFXSX 429
           PPP+P  F  P P  G      P P  F     PP    GG  P                
Sbjct: 66  PPPVPNGFIPPPPGPG---GIPPPPPMFAGGIPPPPPMMGGIPP---------------- 106

Query: 430 XPPPXXKKXPPPPXGGG 480
            PPP     PPPP   G
Sbjct: 107 -PPPMFGAPPPPPPPSG 122


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
 Frame = +3

Query: 318 PPXFFXREKTPPXPFXRGF--FSXKKNFXXXGGGFFXXXXPPPXXKKXXPPPP 470
           PP  F   K PP  F +GF   +    F    G       PP       PPPP
Sbjct: 733 PPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGPMSSFPPPPRGGMHHMPPPP 785


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 431 PPPPXXKXXPPPPXGG 478
           PPPP     PPPP GG
Sbjct: 272 PPPPPTGSPPPPPAGG 287


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 431 PPPPXXKXXPPPPXGG 478
           PPPP     PPPP GG
Sbjct: 293 PPPPPTGSPPPPPAGG 308


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 431 PPPPXXKXXPPPPXGG 478
           PPPP     PPPP GG
Sbjct: 278 PPPPPTGSPPPPPAGG 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,128,586
Number of Sequences: 27780
Number of extensions: 294425
Number of successful extensions: 4536
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2035
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2646946214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)