Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B03
         (1008 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.9  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    23   5.8  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    23   5.8  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    23   5.8  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    23   5.8  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    23   5.8  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    23   5.8  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    23   5.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   5.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   5.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   5.8  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   5.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   5.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   5.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   5.8  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   5.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   5.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 638  KKXXPPPPPPP 670
            ++  PPPPPPP
Sbjct: 1351 RQQQPPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 649  PPPPPPP 669
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 112 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 144


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 112 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 144


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 112 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 144


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 112 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 144


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 112 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 144


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 112 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 144


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 112 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 144


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 361 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 393


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 361 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 393


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 361 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 393


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 361 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 393


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 361 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 393


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 361 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 393


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 360 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 392


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 345 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 377


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  IRGKIPF*RILGPFTGF*PXLKSLDXQQIXRGP 137
           +RG++P  R +GP T F P     D  ++   P
Sbjct: 361 MRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPP 393


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 640 KXXPPPPPP 666
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,717
Number of Sequences: 438
Number of extensions: 5881
Number of successful extensions: 37
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33500103
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)