Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B02
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   4.8  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   8.4  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   8.4  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 684  SPEVGVL*WVLGHPRLLLLVMEIRLGPEVVVLMYHHL 574
            SP+ G+L WVL    L +L+ + R   ++++ + H L
Sbjct: 2033 SPDSGLLGWVLDSDTLHVLIRDYRESRKILLNIEHRL 2069


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 681 GSKPYVGMVKQPTSEQSEFTMSSEDFRRYPARXXAPXXR 797
           GS P+   +  P+S   +FT S   F  Y  +   P  R
Sbjct: 83  GSHPFSPTILSPSSPNMDFTYSINSFGDYQKQLRLPTSR 121


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 225 LHEFGYCAS*NFVSSFLLHLCSE 157
           L E GYC S NF++ F L   SE
Sbjct: 399 LPENGYCQSLNFLAGFFLLFMSE 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,963
Number of Sequences: 5004
Number of extensions: 50891
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)