Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B02
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803...    30   2.9  
07_03_0850 - 22003271-22003516,22004038-22004202,22005065-220051...    29   5.1  

>02_05_0970 -
           33179180-33179210,33179297-33179441,33180307-33180362,
           33180650-33180691,33180814-33180866,33181059-33181490,
           33181630-33181707,33181785-33181870,33183588-33183689,
           33183754-33183960,33184976-33185336,33185463-33185626,
           33185709-33185817,33186468-33186485
          Length = 627

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 23/79 (29%), Positives = 31/79 (39%)
 Frame = +3

Query: 534 RFNAGNNYHSVFGEGGDTSTPPLLDLSEFPSLTARGAGDQXXXXXXXXXGSKPYVGMVKQ 713
           +   GNN     G   D S     D+S+FP LT R +              K  VG V  
Sbjct: 241 QIQGGNNSLGSMGMLHDASDGAPFDMSDFPQLTGRPSSAGGPQGQYGSL-RKQGVG-VNT 298

Query: 714 PTSEQSEFTMSSEDFRRYP 770
              +  EF++ +EDF   P
Sbjct: 299 IVQQNQEFSIQNEDFPALP 317


>07_03_0850 -
           22003271-22003516,22004038-22004202,22005065-22005128,
           22005785-22006074
          Length = 254

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 165 KDEEEMKKRSSTRHSSQTHEDQVMANLNFQQVPRSLA 275
           ++EEE    + +R  S+  E++VMA L+F  +  S+A
Sbjct: 6   REEEEASTAARSRQESEGEEEEVMAVLDFDMLCASVA 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,452,189
Number of Sequences: 37544
Number of extensions: 376063
Number of successful extensions: 967
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)