Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_B02
         (903 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011826-1|AAH11826.1|  540|Homo sapiens CCR4-NOT transcription ...    44   8e-04
BC002597-1|AAH02597.1|  540|Homo sapiens CCR4-NOT transcription ...    44   8e-04
AF180473-1|AAF29827.1|  540|Homo sapiens Not2p protein.                44   8e-04
AF044215-1|AAQ13426.1|  378|Homo sapiens unknown protein.              44   8e-04

>BC011826-1|AAH11826.1|  540|Homo sapiens CCR4-NOT transcription
           complex, subunit 2 protein.
          Length = 540

 Score = 44.0 bits (99), Expect = 8e-04
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
 Frame = +3

Query: 537 FNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXGSKPYVG 701
           F   N+  S    G D S     LDLS+FP+L  R    G+G+          G  PYVG
Sbjct: 202 FGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-GRAPYVG 260

Query: 702 MVKQPTSEQS-EFTMSSEDFRRYP 770
           MV +P +EQS +F++ +EDF   P
Sbjct: 261 MVTKPANEQSQDFSIHNEDFPALP 284


>BC002597-1|AAH02597.1|  540|Homo sapiens CCR4-NOT transcription
           complex, subunit 2 protein.
          Length = 540

 Score = 44.0 bits (99), Expect = 8e-04
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
 Frame = +3

Query: 537 FNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXGSKPYVG 701
           F   N+  S    G D S     LDLS+FP+L  R    G+G+          G  PYVG
Sbjct: 202 FGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-GRAPYVG 260

Query: 702 MVKQPTSEQS-EFTMSSEDFRRYP 770
           MV +P +EQS +F++ +EDF   P
Sbjct: 261 MVTKPANEQSQDFSIHNEDFPALP 284


>AF180473-1|AAF29827.1|  540|Homo sapiens Not2p protein.
          Length = 540

 Score = 44.0 bits (99), Expect = 8e-04
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
 Frame = +3

Query: 537 FNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXGSKPYVG 701
           F   N+  S    G D S     LDLS+FP+L  R    G+G+          G  PYVG
Sbjct: 202 FGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-GRAPYVG 260

Query: 702 MVKQPTSEQS-EFTMSSEDFRRYP 770
           MV +P +EQS +F++ +EDF   P
Sbjct: 261 MVTKPANEQSQDFSIHNEDFPALP 284


>AF044215-1|AAQ13426.1|  378|Homo sapiens unknown protein.
          Length = 378

 Score = 44.0 bits (99), Expect = 8e-04
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
 Frame = +3

Query: 537 FNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXGSKPYVG 701
           F   N+  S    G D S     LDLS+FP+L  R    G+G+          G  PYVG
Sbjct: 203 FGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-GRAPYVG 261

Query: 702 MVKQPTSEQS-EFTMSSEDFRRYP 770
           MV +P +EQS +F++ +EDF   P
Sbjct: 262 MVTKPANEQSQDFSIHNEDFPALP 285


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,646,380
Number of Sequences: 237096
Number of extensions: 2030338
Number of successful extensions: 4495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4491
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)