Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_B01
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 258 4e-69
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 152 4e-37
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 145 4e-35
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 145 4e-35
AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical ... 97 1e-20
U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical p... 76 4e-14
U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 54 1e-07
Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 52 6e-07
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 50 2e-06
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 50 2e-06
Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical pr... 35 0.090
AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans nephrocystin-... 35 0.090
Z66500-4|CAA91305.2| 630|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z73974-2|CAA98271.2| 713|Caenorhabditis elegans Hypothetical pr... 30 1.9
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 258 bits (632), Expect = 4e-69
Identities = 116/195 (59%), Positives = 145/195 (74%), Gaps = 1/195 (0%)
Frame = +3
Query: 177 EAIANSKLLVVGAGGIGCEILKNLVLTGFPYIEIIDLDTIDVSNLNRQFLFHKEHVGKSK 356
E I SK+LV+GAGGIGCE+LKNL +TGF + +IDLDTID+SNLNRQFLF KEHV SK
Sbjct: 9 EKIVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKEHVSSSK 68
Query: 357 AQVAKDSALSFNPNVTIVAHHDSVISNDYGVKYFKQFNIVMNALDNRVARNHVNRLCLAA 536
A A F P + + HDS+ Y +++F+ ++IV+NALDNR ARN+VNR+C AA
Sbjct: 69 AATATQVVKQFCPQIELTFDHDSIFEKKYNMEFFQAYDIVLNALDNRAARNYVNRMCHAA 128
Query: 537 DVPLIETGTAGYAGQVELIKKGLTQCYECQPK-APQKSFPGCTIRNTPSEPIHCIVWAKH 713
+ PLI++G+ GY GQV +I +G T+CYEC K Q ++PGCTIRNTPSE IHC VWAKH
Sbjct: 129 NRPLIDSGSGGYFGQVSVIMRGKTECYECVDKPVQQTTYPGCTIRNTPSEHIHCTVWAKH 188
Query: 714 LFNQLFGEEXPDQDV 758
+FNQLFGE D DV
Sbjct: 189 VFNQLFGEVDIDDDV 203
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 152 bits (368), Expect = 4e-37
Identities = 89/209 (42%), Positives = 126/209 (60%), Gaps = 15/209 (7%)
Frame = +3
Query: 177 EAIANSKLLVVGAGGIGCEILKNLVLTGFPYIEIIDLDTIDVSNLNRQFLFHKEHVGKSK 356
EA+ N+K+LV+GAGG+GCE+LKNL L+GF IE+ID+DTIDVSNLNRQFLF + VGKSK
Sbjct: 38 EALQNTKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNRQFLFRESDVGKSK 97
Query: 357 AQVAKDSALSFNPNVTIVAHHDSVISNDYGVKYFKQFNIVMNALDNRVARNHVN-RLC-- 527
A+VA + AH+ + D G +++++F+I++ LD+ AR +N LC
Sbjct: 98 AEVAAAFVQQRVVGCQVTAHNCRI--EDKGQEFYRKFSIIICGLDSIPARRWINGMLCDL 155
Query: 528 --LAAD--------VPLIETGTAGYAGQVELIKKGLTQCYEC--QPKAPQKSFPGCTIRN 671
AD +P+I+ GT G+ G +I T C +C PQ +FP CTI +
Sbjct: 156 VLEMADGKPDENTIIPMIDGGTEGFKGNARVIYPKFTACIDCTLDLYPPQVNFPLCTIAH 215
Query: 672 TPSEPIHCIVWAKHLFNQLFGEEXPDQDV 758
TP P HCI + K + ++ EE P + V
Sbjct: 216 TPRLPEHCIEYIKVV---VWPEEKPFEGV 241
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 145 bits (351), Expect = 4e-35
Identities = 78/204 (38%), Positives = 115/204 (56%), Gaps = 8/204 (3%)
Frame = +3
Query: 150 AGVFDEKLTEAIANSKLLVVGAGGIGCEILKNLVLTGFP-----YIEIIDLDTIDVSNLN 314
A VF E + + VVGAG IGCE+LKNL + G I+I D+D I++SNLN
Sbjct: 419 AAVFGWPYQECLFRQRWFVVGAGAIGCELLKNLSMMGVACGEGGLIKITDMDQIEISNLN 478
Query: 315 RQFLFHKEHVGKSKAQVAKDSALSFNPNVTIVAHHDSV---ISNDYGVKYFKQFNIVMNA 485
RQFLF + VG K++ A + +FN +V I A + V + + ++F + N V NA
Sbjct: 479 RQFLFRRRDVGGKKSECAARAVTAFNSDVRIEALAERVGLETEHIFNDEFFGELNGVANA 538
Query: 486 LDNRVARNHVNRLCLAADVPLIETGTAGYAGQVELIKKGLTQCYECQPKAPQKSFPGCTI 665
LDN AR +++R C+ +PL+E+GT G G +++ LT+ Y P+K P CT+
Sbjct: 539 LDNVDARRYMDRRCVYYRLPLLESGTMGTKGNTQVVYPYLTESYSSSVDPPEKEIPVCTL 598
Query: 666 RNTPSEPIHCIVWAKHLFNQLFGE 737
+N P+E H I WA+ F F +
Sbjct: 599 KNFPNEIQHTIQWAREQFETFFAQ 622
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 145 bits (351), Expect = 4e-35
Identities = 78/204 (38%), Positives = 115/204 (56%), Gaps = 8/204 (3%)
Frame = +3
Query: 150 AGVFDEKLTEAIANSKLLVVGAGGIGCEILKNLVLTGFP-----YIEIIDLDTIDVSNLN 314
A VF E + + VVGAG IGCE+LKNL + G I+I D+D I++SNLN
Sbjct: 504 AAVFGWPYQECLFRQRWFVVGAGAIGCELLKNLSMMGVACGEGGLIKITDMDQIEISNLN 563
Query: 315 RQFLFHKEHVGKSKAQVAKDSALSFNPNVTIVAHHDSV---ISNDYGVKYFKQFNIVMNA 485
RQFLF + VG K++ A + +FN +V I A + V + + ++F + N V NA
Sbjct: 564 RQFLFRRRDVGGKKSECAARAVTAFNSDVRIEALAERVGLETEHIFNDEFFGELNGVANA 623
Query: 486 LDNRVARNHVNRLCLAADVPLIETGTAGYAGQVELIKKGLTQCYECQPKAPQKSFPGCTI 665
LDN AR +++R C+ +PL+E+GT G G +++ LT+ Y P+K P CT+
Sbjct: 624 LDNVDARRYMDRRCVYYRLPLLESGTMGTKGNTQVVYPYLTESYSSSVDPPEKEIPVCTL 683
Query: 666 RNTPSEPIHCIVWAKHLFNQLFGE 737
+N P+E H I WA+ F F +
Sbjct: 684 KNFPNEIQHTIQWAREQFETFFAQ 707
>AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical
protein F42G8.6 protein.
Length = 402
Score = 97.5 bits (232), Expect = 1e-20
Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Frame = +3
Query: 183 IANSKLLVVGAGGIGCEILKNLVLTGFPYIEIIDLDTIDVSNLNRQFLFHKEHVGKSKAQ 362
+ N +L+VGAGG+GC + L G I I+D D I + NL+RQ + ++ VGKSKAQ
Sbjct: 35 LKNLNVLIVGAGGLGCPVATYLGAAGIGTIGIVDYDHISLDNLHRQVAYKEDQVGKSKAQ 94
Query: 363 VAKDSALSFNPNVTIVAHHDSVISNDYGVKYFKQFNIVMNALDNRVARNHVNRLCLAADV 542
D+ N ++ + H+ S+ S++ ++ FK + IV + DN R +N +C+ ++
Sbjct: 95 ALADNIKLQNSDLNVQVHNTSLDSSN-AMQLFKNYEIVCDCTDNVATRYLINDVCVLLNI 153
Query: 543 PLIETGTAGYAGQVELIKKGL-TQCYECQPKAP 638
PL+ + GQ+ + G CY C +P
Sbjct: 154 PLVSGSALRWDGQLSVYHYGSDCPCYRCLFPSP 186
>U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical
protein T03F1.1 protein.
Length = 419
Score = 75.8 bits (178), Expect = 4e-14
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 12/163 (7%)
Frame = +3
Query: 177 EAIANSKLLVVGAGGIGCEILKNLVLTGFPYIEIIDLDTIDVSNLNRQFLFHKEHVGKSK 356
E I + VVG GG+G + + L G + + D D ++++N+NR F + G SK
Sbjct: 80 ERIREKTVAVVGVGGVGSVVAEMLTRCGIGKLILFDYDKVEIANMNRLF-YQPNQAGLSK 138
Query: 357 AQVAKDSALSFNPNVTIVAHHDSVISND----------YGVKYFKQFNIVMNALDNRVAR 506
+ A+D+ + NP+V I H+ ++ + D G + ++V++ +DN AR
Sbjct: 139 VEAARDTLIHVNPDVQIEVHNFNITTMDNFDTFVNRIRKGSLTDGKIDLVLSCVDNFEAR 198
Query: 507 NHVNRLCLAADVPLIETGTA--GYAGQVELIKKGLTQCYECQP 629
VN C + +E+G + +G ++ I+ G T C+ C P
Sbjct: 199 MAVNMACNEENQIWMESGVSENAVSGHIQYIEPGKTACFACVP 241
>U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula
(ubiquitin activating)homolog protein 1 protein.
Length = 541
Score = 54.4 bits (125), Expect = 1e-07
Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 2/154 (1%)
Frame = +3
Query: 144 RVAGVFDEKLTEAIANSKLLVVGAGGIGCEILKNLVLTGFPYIEIIDLDTIDVSNLNRQF 323
R ++ E+ +I ++ V+G+ + EILK+LVL G ++D ++ +++ + F
Sbjct: 12 RQVRLWGEEGQASIGSTSACVLGSDSLATEILKSLVLAGVQSFYVVDDAKVEQADIGQNF 71
Query: 324 LFHKEHVGKSKAQVAKDSALSFNPNVTIVAHHD--SVISNDYGVKYFKQFNIVMNALDNR 497
H + +G+S+A+ + NP+V+ A + ++ + V+ F++V+ A N
Sbjct: 72 FLHADDIGRSRAEATLEKLTELNPSVSGSASSQPPTALAME-DVEKLTTFSVVVAANQNE 130
Query: 498 VARNHVNRLCLAADVPLIETGTAGYAGQVELIKK 599
++ VP I T G G + + K
Sbjct: 131 EIDTTFAKVLYNIRVPFICIKTFGLIGTIRICIK 164
>Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical
protein C08B6.9 protein.
Length = 343
Score = 52.0 bits (119), Expect = 6e-07
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Frame = +3
Query: 183 IANSKLLVVGAGGIGCEILKNLVLTGFPYIEIIDLDTIDVSNLNRQFLFHK--EHVGKSK 356
I NSK+L++G +G E+ K L L G + ++D +D + FL+ ++ +K
Sbjct: 26 IRNSKVLIIGGKQLGAEVAKTLSLAGVDEMHLVDHRLVDTEEIGMNFLYDASVDNSKMTK 85
Query: 357 AQVAKDSALSFNPNVTIVAHHDSVIS-NDYGV-KYFKQFNIVMNALDNRVARN-HVNRLC 527
+ + + N NV + + V+S ND + +Y +F +V+ LD R VN +C
Sbjct: 86 WAASYNFLYNLNRNVKLFIVEEDVLSKNDSEIEEYLTKFTLVV-VLDESYERTAKVNNIC 144
Query: 528 LAADVPLIETGTAGYAG 578
+ I G+ G
Sbjct: 145 RKHHIRFISGAIYGWIG 161
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +3
Query: 177 EAIANSKLLVVGAGGIGCEILKNLVLTGFPYIEIIDLDTIDVSNLNRQFL--FHKEHVGK 350
E + K+L++GAG +GC I + L+ G +I +D T+ +N RQ L F +G+
Sbjct: 320 ERYSQLKVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLGR 379
Query: 351 SKAQVAKDSALSFNPNVTIVAHHDSV 428
KA+ A+ + P++ AH +V
Sbjct: 380 GKAETAQAAIQRIFPSIQATAHRLTV 405
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +3
Query: 177 EAIANSKLLVVGAGGIGCEILKNLVLTGFPYIEIIDLDTIDVSNLNRQFL--FHKEHVGK 350
E + K+L++GAG +GC I + L+ G +I +D T+ +N RQ L F +G+
Sbjct: 320 ERYSQLKVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLGR 379
Query: 351 SKAQVAKDSALSFNPNVTIVAHHDSV 428
KA+ A+ + P++ AH +V
Sbjct: 380 GKAETAQAAIQRIFPSIQATAHRLTV 405
>Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical
protein R13H4.1 protein.
Length = 1305
Score = 34.7 bits (76), Expect = 0.090
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 582 VELIKKGLTQCYECQPKAPQKSFPGCTIRNTPSEPIHCIV 701
+E + KG+T C++ P +K F + N SEPI+C +
Sbjct: 880 LEAVFKGITSCHQINPSFGEKVFFEFPLENYNSEPINCTI 919
>AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans
nephrocystin-4-like protein protein.
Length = 1305
Score = 34.7 bits (76), Expect = 0.090
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 582 VELIKKGLTQCYECQPKAPQKSFPGCTIRNTPSEPIHCIV 701
+E + KG+T C++ P +K F + N SEPI+C +
Sbjct: 880 LEAVFKGITSCHQINPSFGEKVFFEFPLENYNSEPINCTI 919
>Z66500-4|CAA91305.2| 630|Caenorhabditis elegans Hypothetical
protein T05C12.4 protein.
Length = 630
Score = 32.3 bits (70), Expect = 0.48
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 285 LDTIDVSNLNRQFLFHKEHVGKSKAQVAKDSALSFNPNVTIVAHHDSVI 431
++ D +N+ Q L H E+ A++ D++LS+NPN+T + H ++
Sbjct: 384 IEETDSNNVLDQLLTHAEN----NAEIPSDNSLSYNPNLTYFSLHSRLL 428
>Z73974-2|CAA98271.2| 713|Caenorhabditis elegans Hypothetical
protein F29F11.4 protein.
Length = 713
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 405 IVAHHDSVISNDYGVKYFKQFNIVMNALDNRVARNHVNRLCLAADVPLIETGTAGYAGQV 584
I H D+V+ ND +++ + V LD +H+ L+ + P TG YAGQ+
Sbjct: 67 IEMHKDAVLRNDSALRFRRAAEAVEWLLDELNLSDHIRD--LSEETPWTWTGAMFYAGQL 124
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,656,915
Number of Sequences: 27780
Number of extensions: 387326
Number of successful extensions: 1129
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -