Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A24
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   5.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   6.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 831 SCNVQYFYFPFLRQT 875
           SC +   YFPF +QT
Sbjct: 150 SCTIDVTYFPFDQQT 164


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 799 DYTYSNYSKFRKLKYSFGTNLKHRKKNWKSVFN 701
           D T    SK RK+  S   N  +   N+K  +N
Sbjct: 302 DRTERERSKERKIISSLSNNYNYNNNNYKYNYN 334


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 831 SCNVQYFYFPFLRQT 875
           SC +   YFPF +QT
Sbjct: 144 SCEIDVRYFPFDQQT 158


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 831 SCNVQYFYFPFLRQT 875
           SC +   YFPF  QT
Sbjct: 152 SCEIDVEYFPFDEQT 166


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 831 SCNVQYFYFPFLRQT 875
           SC +   YFPF  QT
Sbjct: 148 SCEIDVEYFPFDEQT 162


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +3

Query: 450 LQRRKKTMRNNASCLLWTMSQ*SVSARDALD*RGPVSPQLS*KSNESPKAIEVHYSWEH 626
           L+R  + + NN +  L T+        D +  +     +       +P+AIE+H++ +H
Sbjct: 156 LERAFRCLGNNLTAFLTTLD----GVNDVVQHQSGSEAEAEFVCIATPEAIELHFTTDH 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,858
Number of Sequences: 438
Number of extensions: 2673
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)