Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A23
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.17 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.23 
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   1.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = -1

Query: 921 PPXPGG*XGXGSFWXGXGXXXGXPGGGXGGXG 826
           PP PGG  G G F  G G   G  GG  GG G
Sbjct: 201 PPGPGGFGGFGGF-GGEGHHHGGHGGFGGGPG 231



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 912 PGG*XGX-GSFWXGXGXXXGXPGGGXGGXG 826
           PGG  G  G F  G G   G PGG  GG G
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 897 GXGSFWXGXGXXXGXPGGGXGGXG 826
           G G F  G G   G PGG  GG G
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPG 245



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 897 GXGSFWXGXGXXXGXPGGGXGGXG 826
           G G F  G G   G PGG  GG G
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLG 252



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 912 PGG*XGX-GSFWXGXGXXXGXPGGGXGGXG 826
           PGG  G  G F  G G   G P GG GG G
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGP-GGHGGPG 272


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 499 PXPPPPXXGXXGKGXPPP 552
           P PPPP  G  G G PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 827 PFPPXPPPGXPXXNPXPXQKEP 892
           P PP PPPG     P P    P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 827 PFPPXPPPGXPXXNPXPXQKEPXPX*PP 910
           P P  P PG P     P  +EP P  PP
Sbjct: 113 PVPEEPLPGEPPLPDEPVPEEPLPGEPP 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,021
Number of Sequences: 5004
Number of extensions: 19529
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)