Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A23
         (927 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74033-3|CAA98477.1|  407|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   3.6  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   3.6  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   3.6  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   3.6  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.7  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    29   6.2  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.2  
L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family ...    28   8.2  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    28   8.2  

>Z74033-3|CAA98477.1|  407|Caenorhabditis elegans Hypothetical
           protein F38B7.3 protein.
          Length = 407

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 493 PLPXPPPPXXGXXGKGXPPPQRRKKGG 573
           P P  PPP     G G  PPQ++  GG
Sbjct: 135 PKPANPPPNAPQQGPGAQPPQQQNNGG 161


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 827 PFPPXPPPGXPXXNPXPXQKEPXPX*PP 910
           P PP PPP  P   P P    P P  PP
Sbjct: 88  PLPPPPPPASPCCGPSPV---PAPCCPP 112


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 833 PPXPPPGXPXXNPXPXQKEPXPX*PP 910
           PP PPP  P   P P    P P  PP
Sbjct: 28  PPCPPPPPPMCAPPPLPCPPPPICPP 53


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = +1

Query: 499 PXPPPPXXGXXGKG-XPPPQRRKKGGXXGXGXXGKXPXXKRGEKGXNP 639
           P PPPP  G    G  PPPQ        G G     P  KR     +P
Sbjct: 297 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSP 344


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = +1

Query: 499 PXPPPPXXGXXGKG-XPPPQRRKKGGXXGXGXXGKXPXXKRGEKGXNP 639
           P PPPP  G    G  PPPQ        G G     P  KR     +P
Sbjct: 318 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSP 365


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = +1

Query: 499 PXPPPPXXGXXGKG-XPPPQRRKKGGXXGXGXXGKXPXXKRGEKGXNP 639
           P PPPP  G    G  PPPQ        G G     P  KR     +P
Sbjct: 303 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSP 350


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 493 PLPXPPPPXXGXXGKGXPPP 552
           P P PPPP  G  G   PPP
Sbjct: 769 PPPPPPPPPGGFKGGPPPPP 788



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 499 PXPPPPXXGXXGKGXPPPQRRKKGG 573
           P PPPP  G      PPP    KGG
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGG 783


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 493 PLPXPPPPXXGXXGKGXPPP 552
           P P PPPP  G  G   PPP
Sbjct: 769 PPPPPPPPPGGFKGGPPPPP 788



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 499 PXPPPPXXGXXGKGXPPPQRRKKGG 573
           P PPPP  G      PPP    KGG
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGG 783


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 493 PLPXPPPPXXGXXGKGXPPP 552
           P P PPPP  G  G   PPP
Sbjct: 352 PPPPPPPPPGGFKGGPPPPP 371



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 499 PXPPPPXXGXXGKGXPPPQRRKKGG 573
           P PPPP  G      PPP    KGG
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGFKGG 366


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 912 PGG*XGXGSFWXGXGXXXGXPGGGXGGXG 826
           PGG  G    W G G      GGG GG G
Sbjct: 22  PGGWGGGPGRWGGWGGNRWGGGGGPGGWG 50


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -1

Query: 921 PPXPGG*XGXGSFWXGXGXXXGXPGGGXGGXG 826
           PP P    G G    G G   G  GGG GG G
Sbjct: 111 PPPPPPACGGGCGGGGGGCGGGCGGGGGGGCG 142


>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 493 PLPXPPPPXXGXXGKGXPPPQRRKKGG 573
           P P PPPP  G      PPP     GG
Sbjct: 39  PPPPPPPPCGGGYEAPPPPPPPSYAGG 65


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +2

Query: 827 PFPPXPPPGXPXXNP-XPXQKEPXP---X*PPGXGG 922
           P PP PPPG     P  P    P P     PPG GG
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG 332


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +2

Query: 827 PFPPXPPPGXPXXNP-XPXQKEPXP---X*PPGXGG 922
           P PP PPPG     P  P    P P     PPG GG
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG 342


>L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family
           protein 1, isoform b protein.
          Length = 737

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -1

Query: 909 GG*XGXGSFWXGXGXXXGXPGGGXGGXG 826
           GG  G G F  G G   G  GG  GG G
Sbjct: 58  GGGGGGGGFGGGNGGFGGGGGGNYGGGG 85


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -1

Query: 909 GG*XGXGSFWXGXGXXXGXPGGGXGGXG 826
           GG  G G F  G G   G  GG  GG G
Sbjct: 58  GGGGGGGGFGGGNGGFGGGGGGSGGGGG 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,706,956
Number of Sequences: 27780
Number of extensions: 218198
Number of successful extensions: 1454
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)