Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A22
         (943 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823,117...    30   2.3  

>02_01_0170 -
           1174224-1174321,1174429-1174588,1174673-1174823,
           1175005-1175156,1175647-1175768,1176773-1176785
          Length = 231

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +1

Query: 376 WDADNFEPKLPTTLA--ASNKWEGED-EDDNV 462
           WD+++F+P +P+  A    +KW  ED E+D+V
Sbjct: 4   WDSEDFQPAVPSAKAEPLKSKWADEDVEEDDV 35



 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 658 EKLRQQKLQEESDLRLAMETFG 723
           EKLRQQ+L EE+D +   E FG
Sbjct: 90  EKLRQQRLVEEADFKSTTELFG 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,484,870
Number of Sequences: 37544
Number of extensions: 309515
Number of successful extensions: 847
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)