Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A22
         (943 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039711-2|AAB96710.1|  416|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AF039711-2|AAB96710.1|  416|Caenorhabditis elegans Hypothetical
           protein F49D11.4 protein.
          Length = 416

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 252 RLWRHLVSDKSLSIVVRFWCSGE 320
           RLWRH  + K L+ V+R W S +
Sbjct: 311 RLWRHSFTPKGLNQVIRLWLSSD 333


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -2

Query: 348 ISSRINMKTFHLNTKIGQLSTVTY--HSQDVSRVVVF*TTTKLKCNSSN*RRFSAIITVG 175
           I  +++   F   T++   S  T    S + +RV+ F T+T+L+  S          TVG
Sbjct: 635 IFEKLSTTLFFEETQVTSTSDFTSSPRSIETTRVIEFDTSTELQTTSKTSTTTEDTTTVG 694

Query: 174 LKNNEQMT*YWR 139
                +M  +WR
Sbjct: 695 TTTEMEMRRFWR 706


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,557,543
Number of Sequences: 27780
Number of extensions: 291782
Number of successful extensions: 827
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)