Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A21
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 61 2e-10
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 58 2e-09
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 57 3e-09
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 54 3e-08
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 48 2e-06
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 46 5e-06
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 44 4e-05
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po... 44 4e-05
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 41 3e-04
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 41 3e-04
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 38 0.001
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 37 0.003
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 35 0.013
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 34 0.024
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 33 0.041
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 31 0.22
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 27 3.6
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 27 3.6
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 27 3.6
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 27 4.7
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 26 6.2
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 26 6.2
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 26 8.2
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 26 8.2
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 60.9 bits (141), Expect = 2e-10
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Frame = +1
Query: 424 LKGKVAIVTASTEGIGYAIAKRLGHEGASV-VISSRKEDNVENAVKSLRSDGITVEGIVC 600
LKGK ++T + GIG++IAK G++V ++ R + +E A + G+ + C
Sbjct: 7 LKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAELRDKHGVQAKAYSC 66
Query: 601 HVANSDHRKKLFEVAKSKFGG-LDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWL 777
+ N + A + GG LD++++NA + + + +E +W K+ IN+ ++
Sbjct: 67 PIENRSAVIETTNQAVEELGGRLDVMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYY 126
Query: 778 LAKEA 792
A+ A
Sbjct: 127 TAQAA 131
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 58.0 bits (134), Expect = 2e-09
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Frame = +1
Query: 421 RLKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVC 600
+L K ++T GIG A A EG+ +VIS E+ + V D I EG C
Sbjct: 39 KLAEKKTLLTGGDSGIGKAAAVMFAREGSDLVISCLPEERDDAEVTR---DLIEREGRNC 95
Query: 601 HV-----ANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVK 765
+ SD+ + L + A K G +D+LV+N A I + D++ WD F+ N+
Sbjct: 96 WIWEGKLDKSDNCRDLVDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIF 155
Query: 766 SSWLLAKEA 792
S + + K A
Sbjct: 156 SFFWVTKAA 164
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 57.2 bits (132), Expect = 3e-09
Identities = 33/120 (27%), Positives = 60/120 (50%)
Frame = +1
Query: 424 LKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCH 603
LKGK +V + +GIG++IA G +V+I+ D E A K G+ V +
Sbjct: 19 LKGKNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKKLAEETGVQVHTLKID 78
Query: 604 VANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLA 783
++ SD + E + F + ++V+NA + P +L++ ++K+ IN S + +A
Sbjct: 79 ISRSDTVEAGVEEIQKIFKEIHVVVANAGM-PFRRSVLDSPPHEFEKVMNINTNSVYRVA 137
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 54.0 bits (124), Expect = 3e-08
Identities = 34/109 (31%), Positives = 53/109 (48%)
Frame = +1
Query: 433 KVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVAN 612
KV ++T S++GIG A A+ L + + +S +E + + V+G V V
Sbjct: 7 KVILLTGSSKGIGLATAEALQKKAKVIAVSRSLTPELETLLIQNPDSFVHVKGDVTEVG- 65
Query: 613 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEIN 759
K E A KFG LD ++ NA V ++ I + D W K+F+IN
Sbjct: 66 ----KASIETAIKKFGKLDSVILNAGVLEPIAKIADADINEWRKLFDIN 110
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 47.6 bits (108), Expect = 2e-06
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Frame = +1
Query: 424 LKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCH 603
L GKVA+VT S+ GIGY A L +GA V ++ R E+ + +K + D + I
Sbjct: 40 LTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIH-DEVRHSKIRFL 98
Query: 604 VANSDHRKKLFEVAKS---KFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSW 774
+ + +++ A+S K L ILV+NA + ++P E + ++ + N S +
Sbjct: 99 RLDLLDFESVYQAAESFIAKEEKLHILVNNAGI---MNPPFELTKDGYELQIQTNYLSHY 155
Query: 775 LLAK 786
L +
Sbjct: 156 LFTE 159
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 46.4 bits (105), Expect = 5e-06
Identities = 31/142 (21%), Positives = 60/142 (42%)
Frame = +1
Query: 433 KVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVAN 612
K+ + GIG ++ K L + +VV +S ++ ++ V I V++
Sbjct: 6 KIYFIAGGNRGIGLSLVKELSNRKGTVVFASARKPGAATKLQEWSKSHSNVHIIKLDVSS 65
Query: 613 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKEA 792
+ + + +D+L N+AV + P++ T + VW+ ++ NV + +
Sbjct: 66 LESANEAAQEVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNSHYKTNVLGPIHVYQAF 125
Query: 793 YLSY*KXRWKHCVIPSLLHTSL 858
Y K R K V S L S+
Sbjct: 126 YPLIKKGRSKIIVFTSSLAGSM 147
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 43.6 bits (98), Expect = 4e-05
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +1
Query: 433 KVAIVTASTEGIGYAIAKRLG-HEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVA 609
KV + GIG ++ K L EG +V S+RK + + +S V+ + V
Sbjct: 6 KVYFIAGGNRGIGLSLVKELSSREGTTVFASARKPEAATELQEWSKSHP-NVKTVELDVT 64
Query: 610 NSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINV 762
+ + + G+D+L N+ + + ++E E+VW+ ++ NV
Sbjct: 65 SQQSANEAAQSVAKAVDGIDVLWLNSGICQSYYTVMEAPEEVWNAHYQTNV 115
>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 43.6 bits (98), Expect = 4e-05
Identities = 21/110 (19%), Positives = 49/110 (44%)
Frame = +1
Query: 433 KVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVAN 612
K+ + GIG ++ K L + +VV +S ++ ++ V I +++
Sbjct: 6 KIYFIAGGNRGIGLSLVKELSNREGTVVFASARKPEAATELQEWSKSHSNVHIIKLDISS 65
Query: 613 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINV 762
+ + + G +D+L N+ + + + +L T + VW+ ++ NV
Sbjct: 66 LESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLNTPDDVWNSHYKTNV 115
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 40.7 bits (91), Expect = 3e-04
Identities = 32/123 (26%), Positives = 53/123 (43%)
Frame = +1
Query: 424 LKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCH 603
LKGK A+V GIG+AI GA+ I + A + +++G+ C
Sbjct: 19 LKGKNAVVFGGARGIGHAICSVFAEAGANAFIVYNTTPGEKAAKEIAQANGVKTYTCKCD 78
Query: 604 VANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLA 783
V + F + F +DI+V N + S I T E+ ++I +N+ + +A
Sbjct: 79 VTIPKEVEHAFAEIQKVFDTIDIVVPNNGICTGKSAIDMTYEEFANEI-NVNLLGVFNVA 137
Query: 784 KEA 792
A
Sbjct: 138 HNA 140
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 40.7 bits (91), Expect = 3e-04
Identities = 23/111 (20%), Positives = 48/111 (43%)
Frame = +1
Query: 430 GKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVA 609
G V ++ GIG ++ K L ++ V +S + + +K V I V
Sbjct: 6 GIVYVIVGGNRGIGLSLVKELSNKEGVTVFASARGPGSASELKDWSKTHSNVHIIKLDVT 65
Query: 610 NSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINV 762
+ K + +D+L N+ ++ + P+L+T +++W ++ NV
Sbjct: 66 SLRSAKDAAMQVEKVVKCIDVLWVNSGISKSFQPVLKTSDELWMSHYQTNV 116
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 38.3 bits (85), Expect = 0.001
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Frame = +1
Query: 427 KGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHV 606
KG A+VT +T+GIG A +L G +VV+ SR ++ ++ K L TV +
Sbjct: 56 KGYWAVVTGATDGIGKEYATQLAMSGFNVVLISRTQEKLDALAKELE----TVAKVKTRT 111
Query: 607 ANSDHRK---KLFEVAKSKFGG--LDILVSNAAVNPTV-SPILETDEQVWDKIFEIN 759
D+ K + FE G + +L++N + + + ET + D I IN
Sbjct: 112 IAIDYTKTTAETFEKLHQDLVGTPITVLINNVGQSHYMPTSFAETTVKEMDDIMHIN 168
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = +1
Query: 442 IVTASTEGIGYAIAKRLGHEGASVVISSRKEDNV---ENAVKSLRSDGITVEGIVCHVAN 612
++T S++G+GYA+ K +G +V+ SR D + + + L+ D V+ +
Sbjct: 9 LITGSSKGLGYALVKVGLAQGYNVIACSRAPDTITIEHSKLLKLKLDVTDVKSV------ 62
Query: 613 SDHRKKLFEVAKSKFGGLDILVSNA 687
+ F+ AK +FG +DI+++NA
Sbjct: 63 ----ETAFKDAKRRFGNVDIVINNA 83
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 35.1 bits (77), Expect = 0.013
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Frame = +1
Query: 424 LKGKVAIVTASTEGIGYAIAKRLGHEGASVV-ISSRKEDNVENAVKSLRSDGITVEGIVC 600
++G+V ++T + GIG + K G V I V++A +L++D
Sbjct: 3 VEGRVVLITGAAGGIGKVLCKMFTELGDRVAGIDIVDPSKVQDAALALQAD--------- 53
Query: 601 HVANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWL 777
V+ +D + E G +D+L++NA + +P + + WD + ++ ++L
Sbjct: 54 -VSKADQIETAIEKVIQTLGPIDVLINNAGLADD-TPFEQLSHESWDHDVSLVLRGNYL 110
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 34.3 bits (75), Expect = 0.024
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +1
Query: 442 IVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGI 579
+VT ++G+G AIAK L GA+V I +R ++ AV L I
Sbjct: 26 LVTGGSQGLGKAIAKELVLRGANVTIVARTVTKLQEAVAELSDSKI 71
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 33.5 bits (73), Expect = 0.041
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 298 KFKHISTHGS--LRVMFRLKFIRSLMNTKMSKTPNFVRANHNDRLKGKVAIVTASTEGIG 471
K++H+ TH + + + I + +T + R ++ G V +VT + GIG
Sbjct: 34 KYEHLITHWAQYTKAAIAVSTIAAFKFWTSGRTTTWER-----KMNGMVVMVTGGSSGIG 88
Query: 472 YAIAKRLGHEGASVVISSRKE 534
+ ++L GA VVI R E
Sbjct: 89 QVVVEKLASLGAQVVILLRTE 109
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 598 CHVANSDHRKKLFEVAKSKFGGLDILVSN 684
CH +N RK+L + +K FGG+ + V N
Sbjct: 34 CHYSNRARRKRLVQRSKETFGGITLPVKN 62
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +1
Query: 649 SKFGGLDILVSNAAVNPTVSPILETDEQVWDKIF---EINVKSSWLLAKEAYLSY*KXR- 816
S+FG + ++ + ++NP+ S ++ T E + ++ EI + +W++ E + K R
Sbjct: 190 SEFGDVGLMTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFDEVHYMRDKDRG 249
Query: 817 --WKHCVI 834
W+ +I
Sbjct: 250 VVWEETLI 257
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +1
Query: 484 KRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVANSDHRKKLFEVAKSKFGG 663
KRL E A + + S K +N+E+ ++RS + G + +H K L+E +K
Sbjct: 215 KRLQLEMAKLDVESAKPENLEHCKSAVRSAEDELNGAI------EHAKILYEQILNKDYN 268
Query: 664 LDILVS 681
D+L S
Sbjct: 269 TDLLRS 274
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 448 TASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLR 567
T + EG+ ++ + L G V+++S + N+EN ++ L+
Sbjct: 14 TGTAEGLAESLFRSLTRMGYDVLVNSMDDFNLENLLRPLQ 53
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 26.6 bits (56), Expect = 4.7
Identities = 27/96 (28%), Positives = 39/96 (40%)
Frame = +1
Query: 484 KRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVANSDHRKKLFEVAKSKFGG 663
KRL + + KED +L V G + +V N HR+ +S+
Sbjct: 176 KRLEKVANKIRVDWEKEDAAVLLGIALTGWSEQVPGRL-YVCNYCHRRLGVWNLQSEGQD 234
Query: 664 LDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSS 771
D+L + P V P TD W +IFE+ K S
Sbjct: 235 FDVLEEHKKSCPWVIPQPFTDLLGWQQIFELLCKES 270
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 502 GASVVISSRKEDNVENAVKSLRSDGITVEGI--VCHVANSDHRKKLFEVAKSKFGGLDIL 675
G +V ISS +D + SL + + I +C+V N D RK L + S+ G ++ L
Sbjct: 129 GVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNIEEL 188
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 502 GASVVISSRKEDNVENAVKSLRSDGITVEGI--VCHVANSDHRKKLFEVAKSKFGGLDIL 675
G +V ISS +D + SL + + I +C+V N D RK L + S+ G ++ L
Sbjct: 129 GVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNIEEL 188
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 755 ISNILSHTCSSVSKIGETVGLTAAFDTRISKPPNLLLATSNN 630
+ +IL+H S + +V A ++ PP L +ATS N
Sbjct: 370 LKDILNHYSKSYNLQNPSVSTAAGTPLYLASPPALQVATSKN 411
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 622 YDLNLQHDKLFLLL*YHRCVSF*LRFQHYLLFYCL*RLKRLHDP 491
Y+ NL +LF L CV Q Y FYCL R + P
Sbjct: 107 YETNLGKPELFWLDYLATCVRVPYACQGYSSFYCLSIFDRYYKP 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,219
Number of Sequences: 5004
Number of extensions: 67413
Number of successful extensions: 194
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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