Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A20
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = -3

Query: 573 GQSNKAAVICAVWLESSSMACLPTITKSAFSSCDSFANI 457
           G  +   ++C +W+    ++C  +I      S D F  I
Sbjct: 105 GNWSFGTIMCDLWVSFDVLSCTASILNLCMISVDRFCAI 143


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 164 GVKRVIDYAVKIRVKPDKS-GVVTDGV-KHSMNPFDEIAVEEAVRMKEKKLASEVIAV 331
           G+K   DYA+++R K  +  G  T  V K + +      V E   M+ + +A  ++AV
Sbjct: 484 GLKPSTDYAIQVRAKTTRGWGEYTPVVYKKTPHAMGLDYVGEDDNMQVRIIAGAIVAV 541


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 823 PTETTLIRGARSTPXSLALTFLRGF 749
           PT+TTL       P +L LT  RG+
Sbjct: 300 PTQTTLNATTLFCPPNLRLTSERGY 324


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 823 PTETTLIRGARSTPXSLALTFLRGF 749
           PT+TTL       P +L LT  RG+
Sbjct: 390 PTQTTLNATTLFCPPNLRLTSERGY 414


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 374 LAMGADRAIHVEVAGAEYDTLQPIHVAKILA 466
           + +G+D   ++E+   E D +  IHV   +A
Sbjct: 463 VTVGSDGNANIEIGAGEEDGVLAIHVKAKMA 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,392
Number of Sequences: 438
Number of extensions: 4464
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)