Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A19
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    40   4e-04
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   3.6  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    27   4.7  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   8.3  

>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
 Frame = +2

Query: 506 KHRGDDEQARTRNRRIFGSLLGTLQKFKQEEIELQ--TKEDKKAQVERKIEEQ 658
           K+  ++   + R RR+FG+LLGTL KF+QE    Q   ++ K+A++E K+ ++
Sbjct: 61  KNTSENSVEQKRGRRMFGALLGTLGKFQQESEREQKSARKVKRAELEEKLAKR 113


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 578 QKFKQEEIELQTKEDKKAQVERK 646
           Q+ KQ+E+E Q +E+K+ Q ER+
Sbjct: 650 QEKKQQELERQKREEKQKQKERE 672


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 483 TNKSSNP*STGVMMNRHAHGIEEFLVPYLVHYR 581
           TN S NP S+   M+    G   F VPY + +R
Sbjct: 125 TNLSENPISSASGMDEELEGGNRFDVPYYIIFR 157


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = -3

Query: 633 CAFLSSLVCNSISSCLNFCNVPSKEPKILLFRVRACSSSP 514
           C     ++ N++  C N   + S+  + +L   ++C++SP
Sbjct: 544 CNIYLEIITNALDVCANVWPLASQASRAILNAYKSCATSP 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,391
Number of Sequences: 5004
Number of extensions: 52751
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)