Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A19
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880... 43 3e-04
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989... 31 1.6
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 31 1.6
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 30 2.1
01_06_1763 + 39723596-39723691,39724030-39724672,39724773-397252... 30 2.1
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958... 30 2.8
05_05_0361 - 24406424-24406666,24407505-24407567,24407792-244079... 29 5.0
02_02_0108 + 6825710-6825903,6826159-6826282 29 5.0
05_04_0006 - 17072576-17072950,17072969-17073179,17075807-17075949 28 8.7
01_01_0100 - 755894-756662,757086-757598,758718-761050 28 8.7
>03_05_0825 -
27986393-27986767,27987541-27987625,27987936-27988036,
27988144-27988227,27988868-27988939,27989203-27989319,
27989386-27989526,27989951-27990122,27990324-27990372,
27990773-27990821,27991240-27991270,27991301-27991371
Length = 448
Score = 43.2 bits (97), Expect = 3e-04
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Frame = +2
Query: 512 RGDDEQARTRNRRIFGSLL-GTLQKFKQEEIELQTKED--KKAQVERKIEEQAXXXXXXX 682
+ +D+ RN+R+ G LL GTL+KF+QE+ +L E ++++V+RK +++A
Sbjct: 187 KDEDQSLVKRNKRMLGKLLVGTLEKFQQEDKKLSNTEAYMRRSEVQRKADQKAREESERL 246
Query: 683 XXXXXVMFAEREQKKAXIKALEAKMGRVQEFEI----WETTQKNLRN 811
E+ ++ ++A A + E+ W K L N
Sbjct: 247 RQQEREQAIEKRKRDMMLRARVAAKAEEKRLELLYMQWAEHHKKLSN 293
>09_02_0496 -
9892242-9892499,9892956-9893045,9893046-9893094,
9893330-9893557,9894095-9894261,9894312-9894395,
9894614-9894820,9894919-9895251,9895371-9895513,
9895607-9895723,9895824-9895980,9896054-9896157,
9896272-9896432,9896518-9896707,9896732-9896834,
9896950-9897231,9897327-9897649,9897750-9897786,
9898109-9898162,9898292-9898368,9898449-9898502,
9898738-9898822,9900289-9900426,9900592-9900603
Length = 1150
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 187 SNLFKLDENIKKIVQTTGRFANDRFNSGDY-PRGGNRIGNRNSYTESGNN 333
S L L N++++ Q T + + D P G R+ N YTE GNN
Sbjct: 589 SILTLLKRNVREMSQETLQIKLENLTGYDQEPSSGGRVTNDKRYTEGGNN 638
>07_01_0733 +
5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 262 NSGDYPRGGNRIGNRNSYTESGNNFKPDEQFGKRKQETKTVFSRISARADNSDGEDDL 435
+ GD+PRGG + +R+ E+ + D F + ++ K R A + + G+DDL
Sbjct: 60 DDGDFPRGGRSLLSRDEVAEA--RAEADADFEREERRGKR--KRKGASSSGAGGDDDL 113
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = +2
Query: 521 DEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQ 658
+E+ + N + L+GT +K K++E E + +E+K + E+K +E+
Sbjct: 227 EEETKKDNEKEKEQLMGTDEKEKEKEKEDENEEEKLEEEEKKDKEE 272
>01_06_1763 +
39723596-39723691,39724030-39724672,39724773-39725275,
39725786-39725905,39726356-39726421,39727146-39727256,
39727650-39727726,39727996-39728063,39728384-39728497,
39728593-39728774,39728926-39728994,39729294-39729449,
39729657-39729734
Length = 760
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 233 PQDALRMIDLTQETILEVAIVSETEILIQKAVTTSNLMSNLENVNR--RQKLYLAEYQQE 406
P D LRMID + E+A+ E E+L + +SN S L+ +N+ QKL + ++ E
Sbjct: 644 PHDQLRMIDNINSLMSELAVERE-ELLRALRIESSN-CSKLKELNKDLTQKLEIQTHRLE 701
Query: 407 L 409
L
Sbjct: 702 L 702
>02_04_0240 -
21194597-21194743,21195579-21195680,21195797-21195875,
21195921-21196043,21196135-21196193,21196453-21196974,
21197434-21198177,21198426-21198506
Length = 618
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = +1
Query: 199 KLDENIKKIVQTTGRFANDRFNSGDYPRGGNRIGNRNSYTESGNNFKPDEQFGKRKQETK 378
K+ +V+ T R +G +P GG + +N + + K E +TK
Sbjct: 526 KISNGNNVVVKQTEMMQKSR--NGSHPAGGRNVQPKNVVSCNEQKRKTGEA-KMAMTKTK 582
Query: 379 TVFSRISARADNSDGEDDL 435
T+ S SAR ++D +D L
Sbjct: 583 TILSEQSARCRSADADDFL 601
>05_05_0361 -
24406424-24406666,24407505-24407567,24407792-24407902,
24407986-24408069,24408748-24408848,24408983-24409589
Length = 402
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 139 VAISFSSLRAQLENEKSNLFKLDENIKKIVQT-TGRFANDRFNSGDYPRGGNRIGNRNSY 315
+A + + L + N N FK++ + K + + G+ N + NSG G N GN +S
Sbjct: 101 MAYNMNQLYPKGGNGNVNSFKMNVGVNKYLHSPNGKDVNGK-NSGANSNGSNSSGNNSSN 159
Query: 316 TESGNNFK 339
+ FK
Sbjct: 160 SAVDKRFK 167
>02_02_0108 + 6825710-6825903,6826159-6826282
Length = 105
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -3
Query: 654 SSIFLSTCAFLSSLVCNSISSCLNFCNVPSKEPKILLFRVRACSSSPLCFKDC 496
+S F C L +++ SC + S+ L+F CSS+ + +DC
Sbjct: 35 TSFFSGKCMLLRQFYPSTLFSCRRLSLLVSRSLHCLVFYYSQCSSAAVIARDC 87
>05_04_0006 - 17072576-17072950,17072969-17073179,17075807-17075949
Length = 242
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Frame = +1
Query: 160 LRAQLENEKSNLFKLDENIKKIVQTTGRFANDRFNSGDYPRG-GNRIGNRNSYTESGNNF 336
+ +E +K K E + V T G D GD G G + SG +
Sbjct: 136 VEVNVELQKEEATKAHEASSQAVPTIGNHVEDDNQEGDGSMGRGGEETLTYAQLASGVRY 195
Query: 337 KPDEQFGKRKQETKTVFSR---ISARADNSDGEDDLPTNKRVRVS 462
E+ R + +T+ + + S+G+DD P + +R+S
Sbjct: 196 LLQEKAYTRAEGEETLLNNGLSVDLLDQYSEGDDDTPEEEHMRMS 240
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +2
Query: 215 LKRLFKPQDALRMIDLTQETILEVAIVSETEILIQKAVTTSNLMSNLENVNRRQKLYLAE 394
+K++ K +D I QET +E E + ++ ++S E +KL+L
Sbjct: 359 VKKVKKNEDMAVEIFKNQETKIEQIKKKEQDEHDKEEQNLGKILSEEEQWAENEKLFLES 418
Query: 395 YQQELTIV 418
Y++E+ ++
Sbjct: 419 YEEEINLI 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,021,149
Number of Sequences: 37544
Number of extensions: 307626
Number of successful extensions: 889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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