Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A19
(890 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U77718-1|AAB48304.1| 743|Homo sapiens pinin protein. 70 1e-11
Y10351-1|CAA71377.1| 711|Homo sapiens nuclear protein SDK3 prot... 69 2e-11
Y09703-1|CAA70874.1| 586|Homo sapiens MEMA protein. 69 2e-11
BC062602-1|AAH62602.1| 717|Homo sapiens pinin, desmosome associ... 69 2e-11
AK223612-1|BAD97332.1| 717|Homo sapiens pinin, desmosome associ... 69 2e-11
AF195139-1|AAG33941.1| 717|Homo sapiens pinin protein. 69 2e-11
AF112222-1|AAF17209.1| 717|Homo sapiens nuclear protein SDK3 pr... 69 2e-11
U90236-1|AAC51654.2| 1262|Homo sapiens myosin VI protein. 33 1.8
BC146764-1|AAI46765.1| 1285|Homo sapiens myosin VI protein. 33 1.8
AL136093-4|CAI42826.1| 1253|Homo sapiens myosin VI protein. 33 1.8
AL136093-3|CAI42824.1| 1262|Homo sapiens myosin VI protein. 33 1.8
AL136093-2|CAI42825.1| 1285|Homo sapiens myosin VI protein. 33 1.8
AL136093-1|CAI42823.1| 174|Homo sapiens myosin VI protein. 33 1.8
AL109897-3|CAI19522.1| 1253|Homo sapiens myosin VI protein. 33 1.8
AL109897-2|CAI19520.1| 1262|Homo sapiens myosin VI protein. 33 1.8
AL109897-1|CAI19521.1| 1285|Homo sapiens myosin VI protein. 33 1.8
AF229111-1|AAK00229.1| 1285|Homo sapiens myosin VI protein. 33 1.8
AB002387-1|BAA20843.2| 1296|Homo sapiens KIAA0389 protein. 33 1.8
U41815-1|AAC50366.1| 920|Homo sapiens nucleoporin 98 protein. 31 4.2
EF071958-1|ABK59096.1| 797|Homo sapiens NUP98/PHF23 fusion prot... 31 4.2
BC041136-1|AAH41136.1| 920|Homo sapiens nucleoporin 98kDa protein. 31 4.2
AJ556055-1|CAD88741.1| 78|Homo sapiens immunoglobulin kappa li... 31 4.2
AF231130-1|AAL56659.1| 1800|Homo sapiens NUP196 nucleoporin prot... 31 4.2
AF071077-1|AAD22396.1| 1638|Homo sapiens Nup98-Nup96 precursor s... 31 4.2
AF071076-1|AAD22395.1| 1712|Homo sapiens Nup98-Nup96 precursor p... 31 4.2
AB040538-1|BAB18537.1| 937|Homo sapiens nucleoporin protein. 31 4.2
AB038155-1|BAB11690.1| 569|Homo sapiens NUP98-HOXD13 fusion pro... 31 4.2
X98260-1|CAA66913.1| 582|Homo sapiens M-phase phosphoprotein 11... 31 5.6
BC139751-1|AAI39752.1| 620|Homo sapiens ZRF1 protein protein. 31 5.6
>U77718-1|AAB48304.1| 743|Homo sapiens pinin protein.
Length = 743
Score = 70.1 bits (164), Expect = 1e-11
Identities = 34/88 (38%), Positives = 51/88 (57%)
Frame = +2
Query: 521 DEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXXXXXXV 700
DE+ + RNRRIFG L+GTLQKFKQE +++++ ++E+K+E QA
Sbjct: 134 DEKGKQRNRRIFGLLMGTLQKFKQESTVATERQNRRQEIEQKLEVQAEEERKQVENERRE 193
Query: 701 MFAEREQKKAXIKALEAKMGRVQEFEIW 784
+F ER K+ ++ LE K+ Q E W
Sbjct: 194 LFEERRAKQTELRLLEQKVELAQLQEEW 221
Score = 33.9 bits (74), Expect = 0.80
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Frame = +1
Query: 139 VAISFSSLRAQLENEKSNLFKLDENIKKIVQTTGRFAND------RFNSGDYPRGGNRIG 300
+A++ +L+ QLE K +L +DENI+K+ TGR ND R + P GG G
Sbjct: 1 MAVAVRTLQEQLEKAKESLKNVDENIRKL---TGRDPNDVRPIQARLLALSGPGGGRGRG 57
Query: 301 N---RNSYTESGNNFKPDEQFGKRKQETKTVFSRISAR--ADNSDGEDDLPTNKRVRVSS 465
+ R +++SG P +Q ++ R + R SD EDD ++ S
Sbjct: 58 SLLLRRGFSDSGG--PPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSV 115
Query: 466 AVCRELPTRAAILKAQ 513
+ TR +++ Q
Sbjct: 116 VATSKERTRRDLIQDQ 131
>Y10351-1|CAA71377.1| 711|Homo sapiens nuclear protein SDK3
protein.
Length = 711
Score = 69.3 bits (162), Expect = 2e-11
Identities = 34/88 (38%), Positives = 50/88 (56%)
Frame = +2
Query: 521 DEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXXXXXXV 700
DE+ + RNRRIFG L+GTLQKFKQE ++ ++ ++E+K+E QA
Sbjct: 129 DEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQAEEERKQVENERRE 188
Query: 701 MFAEREQKKAXIKALEAKMGRVQEFEIW 784
+F ER K+ ++ LE K+ Q E W
Sbjct: 189 LFEERRAKQTELRLLEQKVELAQLQEEW 216
Score = 31.9 bits (69), Expect = 3.2
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Frame = +1
Query: 157 SLRAQLENEKSNLFKLDENIKKIVQTTGRFAND------RFNSGDYPRGGNRIGN---RN 309
+L+ QLE K +L +DENI+K+ TGR ND R + P GG G+ R
Sbjct: 1 TLQEQLEKAKESLKNVDENIRKL---TGRDPNDVRPIQARLLALSGPGGGRGRGSLLLRR 57
Query: 310 SYTESGNNFKPDEQFGKRKQETKTVFSRISAR--ADNSDGEDDLPTNKRVRVSSAVCREL 483
+++SG P +Q ++ R + R SD EDD ++ S +
Sbjct: 58 GFSDSGGG-PPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSVVATSKE 116
Query: 484 PTRAAILKAQ 513
TR +++ Q
Sbjct: 117 RTRRDLIQDQ 126
>Y09703-1|CAA70874.1| 586|Homo sapiens MEMA protein.
Length = 586
Score = 69.3 bits (162), Expect = 2e-11
Identities = 34/88 (38%), Positives = 50/88 (56%)
Frame = +2
Query: 521 DEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXXXXXXV 700
DE+ + RNRRIFG L+GTLQKFKQE ++ ++ ++E+K+E QA
Sbjct: 2 DEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQAEEERKQVENERRE 61
Query: 701 MFAEREQKKAXIKALEAKMGRVQEFEIW 784
+F ER K+ ++ LE K+ Q E W
Sbjct: 62 LFEERRAKQTELRLLEQKVELAQLQEEW 89
>BC062602-1|AAH62602.1| 717|Homo sapiens pinin, desmosome
associated protein protein.
Length = 717
Score = 69.3 bits (162), Expect = 2e-11
Identities = 34/88 (38%), Positives = 50/88 (56%)
Frame = +2
Query: 521 DEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXXXXXXV 700
DE+ + RNRRIFG L+GTLQKFKQE ++ ++ ++E+K+E QA
Sbjct: 135 DEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQAEEERKQVENERRE 194
Query: 701 MFAEREQKKAXIKALEAKMGRVQEFEIW 784
+F ER K+ ++ LE K+ Q E W
Sbjct: 195 LFEERRAKQTELRLLEQKVELAQLQEEW 222
Score = 34.7 bits (76), Expect = 0.46
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Frame = +1
Query: 139 VAISFSSLRAQLENEKSNLFKLDENIKKIVQTTGRFAND------RFNSGDYPRGGNRIG 300
+A++ +L+ QLE K +L +DENI+K+ TGR ND R + P GG G
Sbjct: 1 MAVAVRTLQEQLEKAKESLKNVDENIRKL---TGRDPNDVRPIQARLLALSGPGGGRGRG 57
Query: 301 N---RNSYTESGNNFKPDEQFGKRKQETKTVFSRISAR--ADNSDGEDDLPTNKRVRVSS 465
+ R +++SG P +Q ++ R + R SD EDD ++ S
Sbjct: 58 SLLLRRGFSDSGGG-PPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSV 116
Query: 466 AVCRELPTRAAILKAQ 513
+ TR +++ Q
Sbjct: 117 VATSKERTRRDLIQDQ 132
>AK223612-1|BAD97332.1| 717|Homo sapiens pinin, desmosome
associated protein variant protein.
Length = 717
Score = 69.3 bits (162), Expect = 2e-11
Identities = 34/88 (38%), Positives = 50/88 (56%)
Frame = +2
Query: 521 DEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXXXXXXV 700
DE+ + RNRRIFG L+GTLQKFKQE ++ ++ ++E+K+E QA
Sbjct: 135 DEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQAEEERKQVENERRE 194
Query: 701 MFAEREQKKAXIKALEAKMGRVQEFEIW 784
+F ER K+ ++ LE K+ Q E W
Sbjct: 195 LFEERRAKQTELRLLEQKVELAQLQEEW 222
Score = 34.7 bits (76), Expect = 0.46
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Frame = +1
Query: 139 VAISFSSLRAQLENEKSNLFKLDENIKKIVQTTGRFAND------RFNSGDYPRGGNRIG 300
+A++ +L+ QLE K +L +DENI+K+ TGR ND R + P GG G
Sbjct: 1 MAVAVRTLQEQLEKAKESLKNVDENIRKL---TGRDPNDVRPIQARLLALSGPGGGRGRG 57
Query: 301 N---RNSYTESGNNFKPDEQFGKRKQETKTVFSRISAR--ADNSDGEDDLPTNKRVRVSS 465
+ R +++SG P +Q ++ R + R SD EDD ++ S
Sbjct: 58 SLLLRRGFSDSGGG-PPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSV 116
Query: 466 AVCRELPTRAAILKAQ 513
+ TR +++ Q
Sbjct: 117 VATSKERTRRDLIQDQ 132
>AF195139-1|AAG33941.1| 717|Homo sapiens pinin protein.
Length = 717
Score = 69.3 bits (162), Expect = 2e-11
Identities = 34/88 (38%), Positives = 50/88 (56%)
Frame = +2
Query: 521 DEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXXXXXXV 700
DE+ + RNRRIFG L+GTLQKFKQE ++ ++ ++E+K+E QA
Sbjct: 135 DEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQAEEERKQVENERRE 194
Query: 701 MFAEREQKKAXIKALEAKMGRVQEFEIW 784
+F ER K+ ++ LE K+ Q E W
Sbjct: 195 LFEERRAKQTELRLLEQKVELAQLQEEW 222
Score = 34.7 bits (76), Expect = 0.46
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Frame = +1
Query: 139 VAISFSSLRAQLENEKSNLFKLDENIKKIVQTTGRFAND------RFNSGDYPRGGNRIG 300
+A++ +L+ QLE K +L +DENI+K+ TGR ND R + P GG G
Sbjct: 1 MAVAVRTLQEQLEKAKESLKNVDENIRKL---TGRDPNDVRPIQARLLALSGPGGGRGRG 57
Query: 301 N---RNSYTESGNNFKPDEQFGKRKQETKTVFSRISAR--ADNSDGEDDLPTNKRVRVSS 465
+ R +++SG P +Q ++ R + R SD EDD ++ S
Sbjct: 58 SLLLRRGFSDSGGG-PPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSV 116
Query: 466 AVCRELPTRAAILKAQ 513
+ TR +++ Q
Sbjct: 117 VATSKERTRRDLIQDQ 132
>AF112222-1|AAF17209.1| 717|Homo sapiens nuclear protein SDK3
protein.
Length = 717
Score = 69.3 bits (162), Expect = 2e-11
Identities = 34/88 (38%), Positives = 50/88 (56%)
Frame = +2
Query: 521 DEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXXXXXXV 700
DE+ + RNRRIFG L+GTLQKFKQE ++ ++ ++E+K+E QA
Sbjct: 135 DEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQAEEERKQVENERRE 194
Query: 701 MFAEREQKKAXIKALEAKMGRVQEFEIW 784
+F ER K+ ++ LE K+ Q E W
Sbjct: 195 LFEERRAKQTELRLLEQKVELAQLQEEW 222
Score = 34.7 bits (76), Expect = 0.46
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Frame = +1
Query: 139 VAISFSSLRAQLENEKSNLFKLDENIKKIVQTTGRFAND------RFNSGDYPRGGNRIG 300
+A++ +L+ QLE K +L +DENI+K+ TGR ND R + P GG G
Sbjct: 1 MAVAVRTLQEQLEKAKESLKNVDENIRKL---TGRDPNDVRPIQARLLALSGPGGGRGRG 57
Query: 301 N---RNSYTESGNNFKPDEQFGKRKQETKTVFSRISAR--ADNSDGEDDLPTNKRVRVSS 465
+ R +++SG P +Q ++ R + R SD EDD ++ S
Sbjct: 58 SLLLRRGFSDSGGG-PPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSV 116
Query: 466 AVCRELPTRAAILKAQ 513
+ TR +++ Q
Sbjct: 117 VATSKERTRRDLIQDQ 132
>U90236-1|AAC51654.2| 1262|Homo sapiens myosin VI protein.
Length = 1262
Score = 32.7 bits (71), Expect = 1.8
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 506 KHRGDDEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXX 685
K R +DE+ R + L K KQEE E + +ED + +++ ++E Q
Sbjct: 938 KRREEDEKRRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRIQAEVEAQLARQKEEES 997
Query: 686 XXXXVMFAEREQKKAXIKALEAK 754
V+ ER ++ ++ +++
Sbjct: 998 QQQAVLEQERRDRELALRIAQSE 1020
>BC146764-1|AAI46765.1| 1285|Homo sapiens myosin VI protein.
Length = 1285
Score = 32.7 bits (71), Expect = 1.8
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 506 KHRGDDEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXX 685
K R +DE+ R + L K KQEE E + +ED + +++ ++E Q
Sbjct: 938 KRREEDEKRRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRIQAEVEAQLARQKEEES 997
Query: 686 XXXXVMFAEREQKKAXIKALEAK 754
V+ ER ++ ++ +++
Sbjct: 998 QQQAVLEQERRDRELALRIAQSE 1020
>AL136093-4|CAI42826.1| 1253|Homo sapiens myosin VI protein.
Length = 1253
Score = 32.7 bits (71), Expect = 1.8
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 506 KHRGDDEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXX 685
K R +DE+ R + L K KQEE E + +ED + +++ ++E Q
Sbjct: 938 KRREEDEKRRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRIQAEVEAQLARQKEEES 997
Query: 686 XXXXVMFAEREQKKAXIKALEAK 754
V+ ER ++ ++ +++
Sbjct: 998 QQQAVLEQERRDRELALRIAQSE 1020
>AL136093-3|CAI42824.1| 1262|Homo sapiens myosin VI protein.
Length = 1262
Score = 32.7 bits (71), Expect = 1.8
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 506 KHRGDDEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXX 685
K R +DE+ R + L K KQEE E + +ED + +++ ++E Q
Sbjct: 938 KRREEDEKRRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRIQAEVEAQLARQKEEES 997
Query: 686 XXXXVMFAEREQKKAXIKALEAK 754
V+ ER ++ ++ +++
Sbjct: 998 QQQAVLEQERRDRELALRIAQSE 1020
>AL136093-2|CAI42825.1| 1285|Homo sapiens myosin VI protein.
Length = 1285
Score = 32.7 bits (71), Expect = 1.8
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 506 KHRGDDEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXX 685
K R +DE+ R + L K KQEE E + +ED + +++ ++E Q
Sbjct: 938 KRREEDEKRRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRIQAEVEAQLARQKEEES 997
Query: 686 XXXXVMFAEREQKKAXIKALEAK 754
V+ ER ++ ++ +++
Sbjct: 998 QQQAVLEQERRDRELALRIAQSE 1020
>AL136093-1|CAI42823.1| 174|Homo sapiens myosin VI protein.
Length = 174
Score = 32.7 bits (71), Expect = 1.8
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 506 KHRGDDEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXX 685
K R +DE+ R + L K KQEE E + +ED + +++ ++E Q
Sbjct: 1 KRREEDEKRRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRIQAEVEAQLARQKEEES 60
Query: 686 XXXXVMFAEREQKKAXIKALEAK 754
V+ ER ++ ++ +++
Sbjct: 61 QQQAVLEQERRDRELALRIAQSE 83
>AL109897-3|CAI19522.1| 1253|Homo sapiens myosin VI protein.
Length = 1253
Score = 32.7 bits (71), Expect = 1.8
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 506 KHRGDDEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXX 685
K R +DE+ R + L K KQEE E + +ED + +++ ++E Q
Sbjct: 938 KRREEDEKRRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRIQAEVEAQLARQKEEES 997
Query: 686 XXXXVMFAEREQKKAXIKALEAK 754
V+ ER ++ ++ +++
Sbjct: 998 QQQAVLEQERRDRELALRIAQSE 1020
>AL109897-2|CAI19520.1| 1262|Homo sapiens myosin VI protein.
Length = 1262
Score = 32.7 bits (71), Expect = 1.8
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 506 KHRGDDEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXX 685
K R +DE+ R + L K KQEE E + +ED + +++ ++E Q
Sbjct: 938 KRREEDEKRRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRIQAEVEAQLARQKEEES 997
Query: 686 XXXXVMFAEREQKKAXIKALEAK 754
V+ ER ++ ++ +++
Sbjct: 998 QQQAVLEQERRDRELALRIAQSE 1020
>AL109897-1|CAI19521.1| 1285|Homo sapiens myosin VI protein.
Length = 1285
Score = 32.7 bits (71), Expect = 1.8
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 506 KHRGDDEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXX 685
K R +DE+ R + L K KQEE E + +ED + +++ ++E Q
Sbjct: 938 KRREEDEKRRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRIQAEVEAQLARQKEEES 997
Query: 686 XXXXVMFAEREQKKAXIKALEAK 754
V+ ER ++ ++ +++
Sbjct: 998 QQQAVLEQERRDRELALRIAQSE 1020
>AF229111-1|AAK00229.1| 1285|Homo sapiens myosin VI protein.
Length = 1285
Score = 32.7 bits (71), Expect = 1.8
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 506 KHRGDDEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXX 685
K R +DE+ R + L K KQEE E + +ED + +++ ++E Q
Sbjct: 938 KRREEDEKRRRKEEEERRMKLEMEAKRKQEEEERKXREDDEKRIQAEVEAQLARQKEEES 997
Query: 686 XXXXVMFAEREQKKAXIKALEAK 754
V+ ER ++ ++ +++
Sbjct: 998 QQQAVLEQERRDRELALRIAQSE 1020
>AB002387-1|BAA20843.2| 1296|Homo sapiens KIAA0389 protein.
Length = 1296
Score = 32.7 bits (71), Expect = 1.8
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 506 KHRGDDEQARTRNRRIFGSLLGTLQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXX 685
K R +DE+ R + L K KQEE E + +ED + +++ ++E Q
Sbjct: 949 KRREEDEKRRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRIQAEVEAQLARQKEEES 1008
Query: 686 XXXXVMFAEREQKKAXIKALEAK 754
V+ ER ++ ++ +++
Sbjct: 1009 QQQAVLEQERRDRELALRIAQSE 1031
>U41815-1|AAC50366.1| 920|Homo sapiens nucleoporin 98 protein.
Length = 920
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 235 TGRFANDRFNSGDYPRGGNRIGNRNSYTESGNNFKPDEQFGKRKQETKTVFSR 393
TG F++ NSG + G N+ S T G N P FG++ Q+T ++FS+
Sbjct: 238 TGLFSSSTTNSG-FAYGQNKTAFGTSTTGFGTN--PGGLFGQQNQQTTSLFSK 287
>EF071958-1|ABK59096.1| 797|Homo sapiens NUP98/PHF23 fusion protein
protein.
Length = 797
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 235 TGRFANDRFNSGDYPRGGNRIGNRNSYTESGNNFKPDEQFGKRKQETKTVFSR 393
TG F++ NSG + G N+ S T G N P FG++ Q+T ++FS+
Sbjct: 238 TGLFSSSTTNSG-FAYGQNKTAFGTSTTGFGTN--PGGLFGQQNQQTTSLFSK 287
>BC041136-1|AAH41136.1| 920|Homo sapiens nucleoporin 98kDa protein.
Length = 920
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 235 TGRFANDRFNSGDYPRGGNRIGNRNSYTESGNNFKPDEQFGKRKQETKTVFSR 393
TG F++ NSG + G N+ S T G N P FG++ Q+T ++FS+
Sbjct: 238 TGLFSSSTTNSG-FAYGQNKTAFGTSTTGFGTN--PGGLFGQQNQQTTSLFSK 287
>AJ556055-1|CAD88741.1| 78|Homo sapiens immunoglobulin kappa light
chain variable region protein.
Length = 78
Score = 31.5 bits (68), Expect = 4.2
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 603 SISSCLNFC-NVPSKEPKILLFRVRACSS 520
SISSCLN+C P K PK+L++ + S
Sbjct: 8 SISSCLNWCQQKPGKAPKLLIYAASSLQS 36
>AF231130-1|AAL56659.1| 1800|Homo sapiens NUP196 nucleoporin
protein.
Length = 1800
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 235 TGRFANDRFNSGDYPRGGNRIGNRNSYTESGNNFKPDEQFGKRKQETKTVFSR 393
TG F++ NSG + G N+ S T G N P FG++ Q+T ++FS+
Sbjct: 238 TGLFSSSTTNSG-FAYGQNKTAFGTSTTGFGTN--PGGLFGQQNQQTTSLFSK 287
>AF071077-1|AAD22396.1| 1638|Homo sapiens Nup98-Nup96 precursor
splice variant 1 protein.
Length = 1638
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 235 TGRFANDRFNSGDYPRGGNRIGNRNSYTESGNNFKPDEQFGKRKQETKTVFSR 393
TG F++ NSG + G N+ S T G N P FG++ Q+T ++FS+
Sbjct: 238 TGLFSSSTTNSG-FAYGQNKTAFGTSTTGFGTN--PGGLFGQQNQQTTSLFSK 287
>AF071076-1|AAD22395.1| 1712|Homo sapiens Nup98-Nup96 precursor
protein.
Length = 1712
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 235 TGRFANDRFNSGDYPRGGNRIGNRNSYTESGNNFKPDEQFGKRKQETKTVFSR 393
TG F++ NSG + G N+ S T G N P FG++ Q+T ++FS+
Sbjct: 238 TGLFSSSTTNSG-FAYGQNKTAFGTSTTGFGTN--PGGLFGQQNQQTTSLFSK 287
>AB040538-1|BAB18537.1| 937|Homo sapiens nucleoporin protein.
Length = 937
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 235 TGRFANDRFNSGDYPRGGNRIGNRNSYTESGNNFKPDEQFGKRKQETKTVFSR 393
TG F++ NSG + G N+ S T G N P FG++ Q+T ++FS+
Sbjct: 238 TGLFSSSTTNSG-FAYGQNKTAFGTSTTGFGTN--PGGLFGQQNQQTTSLFSK 287
>AB038155-1|BAB11690.1| 569|Homo sapiens NUP98-HOXD13 fusion
protein protein.
Length = 569
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 235 TGRFANDRFNSGDYPRGGNRIGNRNSYTESGNNFKPDEQFGKRKQETKTVFSR 393
TG F++ NSG + G N+ S T G N P FG++ Q+T ++FS+
Sbjct: 238 TGLFSSSTTNSG-FAYGQNKTAFGTSTTGFGTN--PGGLFGQQNQQTTSLFSK 287
>X98260-1|CAA66913.1| 582|Homo sapiens M-phase phosphoprotein 11
protein.
Length = 582
Score = 31.1 bits (67), Expect = 5.6
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +2
Query: 575 LQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXXXXXXVMFA-EREQKKAXIKALEA 751
++KFK+EE + + + +KKA+ E K +EQ A E+E+++ +AL A
Sbjct: 294 IKKFKEEE-KAKKEAEKKAKAEAKRKEQEAKEKQRQAELEAARLAKEKEEEEVRQQALLA 352
Query: 752 KMGR-VQEFEIWETTQKNLRN 811
K + +Q+ I + QK LRN
Sbjct: 353 KKEKDIQKKAIKKERQK-LRN 372
>BC139751-1|AAI39752.1| 620|Homo sapiens ZRF1 protein protein.
Length = 620
Score = 31.1 bits (67), Expect = 5.6
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +2
Query: 575 LQKFKQEEIELQTKEDKKAQVERKIEEQAXXXXXXXXXXXXVMFA-EREQKKAXIKALEA 751
++KFK+EE + + + +KKA+ E K +EQ A E+E+++ +AL A
Sbjct: 279 IKKFKEEE-KAKKEAEKKAKAEAKRKEQEAKEKQRQAELEAARLAKEKEEEEVRQQALLA 337
Query: 752 KMGR-VQEFEIWETTQKNLRN 811
K + +Q+ I + QK LRN
Sbjct: 338 KKEKDIQKKAIKKERQK-LRN 357
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,606,979
Number of Sequences: 237096
Number of extensions: 1611474
Number of successful extensions: 4265
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4259
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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