Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A18
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067936-3|AAC19216.2|  922|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF000264-4|AAC71125.3|  631|Caenorhabditis elegans Hypothetical ...    29   6.0  

>AF067936-3|AAC19216.2|  922|Caenorhabditis elegans Hypothetical
           protein C24G6.3 protein.
          Length = 922

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 789 CNHENYEVNQTLKII*YNNGPRLNRKISLIIPMISDNR 676
           C+ E YE    L I+ YN  P   + +SLI P+I   R
Sbjct: 254 CSDEEYEDVLNLLILAYNRFPAQKKNLSLIEPLIGGIR 291


>AF000264-4|AAC71125.3|  631|Caenorhabditis elegans Hypothetical
           protein F43E2.3 protein.
          Length = 631

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = +3

Query: 75  TLSH*YKTFELFLCKMVLADFL-SETRRRWLKAFKL--FKGNKHRKSSRNRVSPSLVRSP 245
           +LS  Y +    LC  V A+   ++T    ++  KL  F+GN  R  S+   SPS  R+P
Sbjct: 49  SLSDKYNSSSTTLCSSVHAESCPTDTEDAIIRNIKLPGFRGNISRALSQKSNSPSGCRTP 108

Query: 246 SYNGTVDARSEIDVHKFCGCRTSLPPLTN 332
           +      +  +  V +    ++S+ P  N
Sbjct: 109 TPKTAPPSYEQFQVLRRNSMKSSVQPQRN 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,257,799
Number of Sequences: 27780
Number of extensions: 248608
Number of successful extensions: 710
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)